Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0079
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 32 0.42
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.97
08_02_1007 - 23495941-23496486,23496933-23497094,23497184-234973... 29 2.2
07_03_0846 - 21983581-21986055 29 2.2
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 28 5.2
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 28 5.2
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 28 6.8
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 28 6.8
09_04_0407 + 17345382-17345579,17345711-17346235 28 6.8
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 6.8
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 28 6.8
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 27 9.0
03_02_0474 - 8759585-8759626,8759753-8759893,8760001-8760093,876... 27 9.0
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -2
Query: 343 VREEPQFRTFGSCTRPSGRWCEATIRGIMPNAS-KAEASLAESGKDMLTVEPRESGGSKQ 167
+ P G RP+ +++IRGI+P S KA++SL + + +L + S +Q
Sbjct: 60 ISPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQ 119
Query: 166 CDFTSRVSHS 137
T+ S S
Sbjct: 120 VKATTSRSFS 129
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 235 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 101
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>08_02_1007 -
23495941-23496486,23496933-23497094,23497184-23497361,
23497473-23497882
Length = 431
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 297 RAAGGAKLPSAGLCRTPLRPKPA 229
RA GA+LP+ CRTP P P+
Sbjct: 22 RAVVGAQLPTTSPCRTPKSPPPS 44
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 93 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 242
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -2
Query: 322 RTFGSCTRPSGRWCEATIRGIMPNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 155
R GS RP C A I+ + + AEA LA G D++ +G G+ Q D
Sbjct: 86 RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145
Query: 154 SRV 146
R+
Sbjct: 146 RRL 148
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 282 AKLPSAGLC-RTPLRPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 112
A+LP L R P + AR C W PESR ++ V ++A ++R+ A
Sbjct: 426 AELPDPALQGRFPQEEMQIMAHLARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 533 QPSVHSDVVFDPSMSALPIIAKQNSPSVGLFTHQKGT 423
Q + S VV +SA P + SPSVG FT K +
Sbjct: 302 QDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKAS 338
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 533 QPSVHSDVVFDPSMSALPIIAKQNSPSVGLFTHQKGT 423
Q + S VV +SA P + SPSVG FT K +
Sbjct: 321 QDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKAS 357
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 287 VVRSYHPRDYAERL*GRSQPSRIRQGYAHCGAP 189
+ + YHP+ A +S S IR+ YAHC P
Sbjct: 4 LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVP 36
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 244 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 71
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 70 TRASR 56
TRA+R
Sbjct: 64 TRAAR 68
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 27.9 bits (59), Expect = 6.8
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Frame = +3
Query: 21 RHRTELYPDLRSR-DARVKKKTDSIDLRDPNGLRRRVSRFECET--RLVKSHCLEPPDSR 191
RH L ++RS D KT ++L GL + L SH L +
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203
Query: 192 GSTVSISLPDSARLASALEAFGIIPRMVASHHRPL-GRVHEPNV 320
GSTVSI+LP ++ S+ A I + RPL GR P V
Sbjct: 204 GSTVSINLPVVNQVFSSNRAIIIPHTSPLARIRPLAGRYVPPEV 247
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 325 FRTFGSCTRPSGRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFT 155
FR G+ RP+ T R M S + AE+GK M P GG + C F+
Sbjct: 110 FRAHGALLRPAASALTKTPRRKMRGTSDQSPAAAEAGKRMAL--PERLGG-EPCSFS 163
>03_02_0474 -
8759585-8759626,8759753-8759893,8760001-8760093,
8760194-8760352
Length = 144
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 477 DRKSRHRRIKNNVAMNAWLPQAS--YPCGN 560
D RH K N A N W+P A YP +
Sbjct: 108 DASERHASCKGNPATNEWIPSADTVYPASD 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,650,955
Number of Sequences: 37544
Number of extensions: 380847
Number of successful extensions: 1077
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -