Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30117
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    34   0.078
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    29   2.9  
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468     28   5.1  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    28   5.1  
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856     27   6.8  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    27   8.9  
04_03_0904 + 20717005-20718087                                         27   8.9  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 33.9 bits (74), Expect = 0.078
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 264 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 404
           D +G G+YG         N  +V +  +SLE I  E+LN+ +  F W
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 304 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 206
           F   +PYEPTP +++ F  V  D      P DR
Sbjct: 79  FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111


>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
          Length = 898

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -3

Query: 349 LMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNM 170
           + LP G YD F +Q F   Y + P      PF S +P        FDR     Y      
Sbjct: 150 VFLPAGLYDRF-YQHFCKGYLW-PLFHYMLPFASALPAAASGDGRFDRGAWEAYVLANKY 207

Query: 169 FFKKVL 152
           FF+KV+
Sbjct: 208 FFEKVV 213


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 240 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLG-SISLEGIVSEELNMSV 389
           G TD+ G D  G+  +G  +   +K   S  PLG  ++    V+  LN+SV
Sbjct: 55  GDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSV 105


>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
          Length = 1002

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 303 NSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPWSKSL*ISAIGKESSLKNA 458
           NS +GNPS  P G  +L   V +  +++ G  P S S  + + G  S ++ A
Sbjct: 658 NSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSDSATVDSGGGFSKIEIA 709


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 287 RIDEYKQLEGESIVCTLRQHQP*RHSVRGVEHVSRNLSLVQEL 415
           +I  YK+ E + I   L +H+P + + + +EH+S    ++  L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = -3

Query: 289 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKVL----VYHEGELFPY 122
           PY PTPK + P  +  P  KP   P   P  PQ    P+ +  K       Y      PY
Sbjct: 289 PYTPTPKPNPP-PTYKPQPKP--TPTPTPYKPQPKPTPSPYTPKPTPTPPTYTPTPTPPY 345

Query: 121 LFNIPHYTP 95
               P YTP
Sbjct: 346 HKPPPSYTP 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,036
Number of Sequences: 37544
Number of extensions: 274817
Number of successful extensions: 724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)