SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30109
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        215   2e-56
02_05_0416 + 28791512-28792012                                        211   2e-55
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   1.7  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    28   5.1  
07_03_0574 - 19629875-19631032                                         27   6.8  
07_03_0313 + 16620817-16621515                                         27   6.8  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    27   6.8  
03_06_0499 - 34354040-34354528                                         27   6.8  
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090...    27   8.9  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    27   8.9  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  215 bits (525), Expect = 2e-56
 Identities = 103/140 (73%), Positives = 124/140 (88%), Gaps = 1/140 (0%)
 Frame = +2

Query: 98  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 274
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 275 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 454
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA+IMRNR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120

Query: 455 SMARXLSGSVKEILGTAQSV 514
           SMA+ ++G+VKEILGT  SV
Sbjct: 121 SMAKEMAGTVKEILGTCVSV 140


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  211 bits (516), Expect = 2e-55
 Identities = 101/140 (72%), Positives = 123/140 (87%), Gaps = 1/140 (0%)
 Frame = +2

Query: 98  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 274
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 275 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 454
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA++MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120

Query: 455 SMARXLSGSVKEILGTAQSV 514
           SMA+ ++G+VKEILGT  SV
Sbjct: 121 SMAKEMAGTVKEILGTCVSV 140


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 254 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 382
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 95  KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 223
           K+P + F  N +KIV ++C G EV         +G  G+  +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412


>07_03_0574 - 19629875-19631032
          Length = 385

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 432 IPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 304
           +P     E++P C ++F F R+ G  SL A  + AA      +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290


>07_03_0313 + 16620817-16621515
          Length = 232

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 261 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 124
           PF     +A++      D     +LGAK D+   S P H K  +L+
Sbjct: 15  PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 137 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 238
           N +C G E G  S  AP++ PLG+ PK  G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765


>03_06_0499 - 34354040-34354528
          Length = 162

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -1

Query: 471 RXRAIDLFLMIFA-IPITSSREMLPLCLIFFCFLRSRGGSLRALMIRAAAEGTTAIWACL 295
           + R I+ +L+ ++   + S  ++    L FF     RGG  R+L    AA+G  A W C 
Sbjct: 45  KSRGIERYLLSWSDFLLGSGAKLKEKYLGFFSGEGERGGEARSL----AAKGAAAAWPCC 100

Query: 294 F*TVSCTVILRP 259
                CT  + P
Sbjct: 101 DNCGGCTKSIPP 112


>07_01_1116 +
           10308029-10308111,10308575-10308737,10308996-10309062,
           10309120-10309375,10309658-10309781,10310039-10310077
          Length = 243

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 340 DKGCCRGNNSYLGL-SVLNCQLHSD 269
           D GCC    SYLGL  +L C++++D
Sbjct: 62  DCGCCYALPSYLGLFHILICKVYAD 86


>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
            34543642-34543731,34544324-34544390,34544483-34544676,
            34544770-34545510,34545596-34545661,34545783-34545908,
            34545978-34546073,34546153-34546521,34546602-34546724,
            34546802-34546906,34547394-34547531,34547665-34547760,
            34548018-34548275
          Length = 1311

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 248  LWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 141
            +W   C H P+ E D E R  GP      L R  I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,706
Number of Sequences: 37544
Number of extensions: 309709
Number of successful extensions: 775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -