Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0044
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0235 + 23819060-23819114,23819486-23819542,23819707-238198...    33   0.23 
04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748     30   1.6  
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945           29   2.8  
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105           29   3.7  
11_03_0055 - 9356602-9356709,9357042-9357221                           29   4.9  
08_01_0982 - 9947192-9947474,9948649-9948950                           29   4.9  
04_01_0052 - 548383-548494,548523-548592,549184-549364                 29   4.9  
02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117...    28   8.5  
01_07_0177 - 41776168-41776314,41776395-41776456,41777029-417771...    28   8.5  

>04_04_0235 +
           23819060-23819114,23819486-23819542,23819707-23819808,
           23820162-23820238,23820347-23820470,23820730-23820794,
           23821827-23821896,23822395-23822470,23822597-23822687,
           23822767-23822889
          Length = 279

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 276 VSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNP 455
           ++DEP +     KL  D KE   AN TS+A       P P+ P+   +     ++    P
Sbjct: 195 LNDEPWLTLLCKKLQLDIKEIIEANKTSEASFCAENSPVPFHPAEEKLGSSSTRSSKGRP 254

Query: 456 YK 461
            K
Sbjct: 255 AK 256


>04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748
          Length = 373

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 535 TVMCEITFDPG-KFDTLCGPLVDSFA-STLNDESYTR 639
           +V+  I  +PG   D  CGPL+DSFA  TLN    T+
Sbjct: 158 SVVLFIVHNPGVSDDEACGPLIDSFAIKTLNPPQRTK 194


>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
          Length = 493

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 355 LLKRYPLTTL-NLPHIDHLAPLY 420
           LL+ +PLT L +L H+DH+ PLY
Sbjct: 290 LLRAHPLTPLVSLHHLDHVYPLY 312


>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
          Length = 430

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 264 RPKAVSDEPKVDTSKSK-LSADAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQA 440
           +P +    P  ++S S  + A A  + P  YT+  LP Y  +   Y P  PS+Q  L   
Sbjct: 36  QPSSPPPPPPPESSPSHYVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAP 95

Query: 441 QDQN 452
            D +
Sbjct: 96  YDHH 99


>11_03_0055 - 9356602-9356709,9357042-9357221
          Length = 95

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
 Frame = -1

Query: 610 KQMNPPRDHTRCQ-TCP---GQRLS 548
           K+ N PRDH++C+  CP   GQRLS
Sbjct: 55  KKKNEPRDHSQCKPECPWSFGQRLS 79


>08_01_0982 - 9947192-9947474,9948649-9948950
          Length = 194

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 192 NGDISAPKGRGRGWQMNNQARELR 263
           NGD+ AP G G+G    N  RE R
Sbjct: 134 NGDLRAPSGGGQGLGSRNTCREAR 157


>04_01_0052 - 548383-548494,548523-548592,549184-549364
          Length = 120

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = +1

Query: 556 FDPGKFDTLCG----PLVDSFASTLNDESYTRPLVDAIVN 663
           FD G FDT+C     P +DSFA+   D SY   ++DA+V+
Sbjct: 33  FDSGMFDTVCSIGQFPALDSFAAQEFD-SY--DVIDAVVS 69


>02_01_0170 -
           1174224-1174321,1174429-1174588,1174673-1174823,
           1175005-1175156,1175647-1175768,1176773-1176785
          Length = 231

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 54  DFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL 155
           DF  Y  ++AN++  YE  + Y   L N ++ ++
Sbjct: 130 DFAEYAELIANKLRPYEKSFHYMGLLKNVMRLSM 163


>01_07_0177 -
           41776168-41776314,41776395-41776456,41777029-41777191,
           41777278-41777375,41777911-41777992,41778391-41778512,
           41778645-41778722,41778873-41779026,41779629-41779767,
           41780453-41780820
          Length = 470

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 219 RGRGWQMNNQARELRRPKAVSDEPKV 296
           RG GWQ      E+ RP  ++ +P+V
Sbjct: 56  RGPGWQREKLPAEIPRPSTIAFQPRV 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,041,260
Number of Sequences: 37544
Number of extensions: 441393
Number of successful extensions: 1301
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)