Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0042
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0076 + 25381814-25381880,25382927-25382967,25383398-253835...    34   0.14 
02_01_0226 + 1476529-1476585,1477207-1477297,1478247-1478362,147...    28   9.3  
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803...    28   9.3  

>05_06_0076 +
           25381814-25381880,25382927-25382967,25383398-25383502,
           25383612-25383695,25384069-25384103,25384562-25384647,
           25385529-25385594,25385936-25385970
          Length = 172

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
 Frame = +2

Query: 116 MPRGKFTNHKGRNRKFTSPEELEEQRKHDEQK--KKWRKEQXXXXXXXXXXXXXXXXXXX 289
           M RGKF       R F+S E++         K  KK + E+                   
Sbjct: 1   MARGKFKGKPTGERSFSSEEQIAAGTSAGRPKNFKKKQSEKEVYDRRQESDEEYDRSQES 60

Query: 290 XXXXXXXXHPTKAKGVSGLIEVENPNRV 373
                      K KG  GLIE+ENPN V
Sbjct: 61  DEEESDNFQKNKHKGTEGLIEIENPNLV 88


>02_01_0226 +
           1476529-1476585,1477207-1477297,1478247-1478362,
           1478834-1478893,1479000-1479065,1479847-1480047
          Length = 196

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 156 RLRPLWLVNLPRGILRFYLVI*FEQTKNIEVLKRFKIVIKYKMM 25
           +LRPLW + L       Y+V   ++ + I+  + F+ +IK  +M
Sbjct: 73  KLRPLWKMYLSNSDALIYVVDSLDRERIIDARQEFQTIIKDPLM 116


>01_06_0735 -
           31579201-31579208,31579402-31579467,31580222-31580307,
           31580396-31580430,31580586-31580669,31580754-31580843,
           31581267-31581304,31582042-31582108
          Length = 157

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 323 KAKGVSGLIEVENPNRV 373
           K KG  GLI++ENPN V
Sbjct: 66  KHKGTEGLIQIENPNLV 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,452,318
Number of Sequences: 37544
Number of extensions: 144972
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)