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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0017
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    32   0.50 
11_06_0610 - 25449085-25453284                                         29   3.6  
01_06_0475 + 29610268-29610711                                         29   6.2  

>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 273 KKKNNDDQRSRSPRYGDPIRPPDTPRSQNQPAGSERDT 386
           ++ + +++RSRSPR  D   P  +PR    P GS RD+
Sbjct: 171 RRDSRNERRSRSPR--DSRSPRGSPRDSRSPRGSPRDS 206



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 273 KKKNNDDQRSRSPRYG--DPIRPPDTPRSQNQPAGSERDT 386
           ++++   + SRSPR    D   P  +PR    P GS RDT
Sbjct: 177 ERRSRSPRDSRSPRGSPRDSRSPRGSPRDSRSPKGSPRDT 216


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 321  DPIRPPDTPRSQNQPAGSERDTPPT 395
            +PI PP+TP     P+  E  +PP+
Sbjct: 1083 EPISPPETPEKSYPPSTPEESSPPS 1107


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 24/82 (29%), Positives = 34/82 (41%)
 Frame = +3

Query: 21  SPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGL 200
           SP SS+P      S+++ TL HSP S SPD            +    LL     AT  G 
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPDTNHADHVAVSCAYRRLALLSSSRAATHPGT 110

Query: 201 SPLNSPTS*GYAGIASQGYQLR 266
           +   S     YA ++   ++ R
Sbjct: 111 NVALSLIHDAYAILSDPNHRPR 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,348,564
Number of Sequences: 37544
Number of extensions: 437915
Number of successful extensions: 1174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).