BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0077 (424 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_06_0386 + 33555682-33556344,33557138-33557299 146 6e-36 07_01_0756 + 5819367-5820038,5820847-5821005 141 2e-34 03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 42 3e-04 07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 31 0.29 11_01_0395 + 2999855-2999920,3000605-3002191 28 3.6 11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 4.7 11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 27 6.2 >03_06_0386 + 33555682-33556344,33557138-33557299 Length = 274 Score = 146 bits (354), Expect = 6e-36 Identities = 64/94 (68%), Positives = 81/94 (86%) Frame = +2 Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322 ++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96 Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424 KQTRAGQRTRFKAFV +GDNNGH+GLGVKC KEV Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEV 130 >07_01_0756 + 5819367-5820038,5820847-5821005 Length = 276 Score = 141 bits (342), Expect = 2e-34 Identities = 63/94 (67%), Positives = 80/94 (85%) Frame = +2 Query: 143 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 322 ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99 Query: 323 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424 KQTRAGQRTRFKAFV +GD +GH+GLGVKC KEV Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEV 133 >03_04_0238 - 19219040-19219218,19220296-19220350,19221606-19221690, 19222068-19222798 Length = 349 Score = 41.5 bits (93), Expect = 3e-04 Identities = 17/45 (37%), Positives = 29/45 (64%) Frame = +2 Query: 290 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCXKEV 424 ++ V+++ V K + G++ F+A V +GD GH+G+GV KEV Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEV 215 >07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 Length = 233 Score = 31.5 bits (68), Expect = 0.29 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +2 Query: 362 FVAIGDNNGHIGLGVKCXK 418 FV +GD + HI LGVKC K Sbjct: 2 FVVVGDGDSHIELGVKCAK 20 >11_01_0395 + 2999855-2999920,3000605-3002191 Length = 550 Score = 27.9 bits (59), Expect = 3.6 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = +2 Query: 230 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 349 +F +++ ++IDF L L D + I+P+ R G++T Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276 >11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367, 4004474-4004556,4004661-4004775,4005309-4005400, 4005558-4005612,4005689-4005834,4005888-4006001, 4006149-4006342,4006985-4007112,4008526-4008583, 4009800-4009876,4010214-4010263,4010336-4010515, 4010633-4010731,4010816-4011133,4011221-4011281, 4011693-4012781,4012951-4013005,4013133-4013291, 4013923-4014442 Length = 1406 Score = 27.5 bits (58), Expect = 4.7 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 146 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 280 + KE +P G V G+ +++ + SLPIK++ + FF G Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849 >11_04_0439 + 17749634-17749858,17750164-17750301,17750770-17750943, 17751099-17751184,17751264-17751525,17751616-17751815, 17753631-17754086,17754198-17754474,17754694-17754828, 17754946-17755026,17756305-17756400,17756676-17756771, 17756844-17756900,17756975-17757043,17757158-17757237, 17758185-17758329,17758422-17758511,17758914-17758994, 17759103-17759198,17759279-17759335,17759417-17759461, 17759547-17759612,17760304-17760350,17762771-17762865, 17763375-17763393,17763438-17763498,17763637-17763660 Length = 1085 Score = 27.1 bits (57), Expect = 6.2 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -1 Query: 424 DFLXALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 308 +F+ LHT +M V +E C LS F+ +HD Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,454,356 Number of Sequences: 37544 Number of extensions: 195407 Number of successful extensions: 612 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 603 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 610 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 778540620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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