Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0072
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 34 0.12
04_04_0248 - 23891684-23892064 33 0.16
12_02_0063 + 13098519-13099585,13099759-13099906 33 0.28
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 32 0.37
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 32 0.49
04_01_0615 - 8060085-8060972 31 0.86
07_03_0439 + 18212584-18213065,18214164-18215010 31 1.1
09_06_0280 + 22010270-22011407,22011890-22013097 30 2.0
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 29 2.6
05_03_0458 + 14280953-14281866,14281964-14282912 29 2.6
12_02_0589 + 20850249-20850491,20850583-20851839 29 3.5
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 3.5
03_05_1129 - 30595580-30595771,30596119-30597162 29 3.5
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 4.6
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 4.6
02_02_0183 + 7576901-7576908,7577666-7578176 29 4.6
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 28 6.1
03_02_1009 + 13189349-13189592,13189782-13189882,13191085-131910... 28 6.1
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 28 8.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 8.0
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 28 8.0
01_01_0595 - 4430738-4430785,4430904-4432679 28 8.0
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 434 TESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAV---TLIPKIAVNITSVSRA 604
T P + R K QT +A +PP+R A + + T +P + N +SVS
Sbjct: 261 TSPPHKNSHIPRALPPKESSSQTGTAHKPPIRGSAPAETPLPQNTNMPAVPKNGSSVSHD 320
Query: 605 LPASTVAPSEPFSRS 649
P STVA +P + S
Sbjct: 321 RPPSTVAAPKPATSS 335
>04_04_0248 - 23891684-23892064
Length = 126
Score = 33.5 bits (73), Expect = 0.16
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Frame = +2
Query: 353 MKTSATFSGTAGTEKPPAISAAPDL-PTTESPAS----ACGLIRFRSAKTKK*QTDSAAQ 517
M T TA T PA+ AA + P + A A RFRSA + AA
Sbjct: 1 MATQNRSETTAATRIWPAVVAAARMRPAAATGARMQSVAAAATRFRSAAAAASRMRLAAA 60
Query: 518 PPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEPFSRSETPTALVTA 676
R A +A+ L+P A T+ PA+ AP P + + P TA
Sbjct: 61 AATRMRPAAAAAMPLLPSAA---TAARMWPPAAKAAPMHPAAATAAPLQSATA 110
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +2
Query: 398 PPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIA 577
PP AA P +P +I + A +K A+PP + + + AV+ P
Sbjct: 183 PPPYPAAQAAPQAPAPPRQVPVITQQQAPPQKRPAAPVAEPPCATKKM-KGAVSAKPMAP 241
Query: 578 VNITSVSRALPASTVAPSE 634
+ + S A P VAPS+
Sbjct: 242 QSSVTASAAPPRCAVAPSQ 260
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 18 TLVPGLSSQYVFEVFISVSGRPR--RSCGPRVLQMPRRLRFLPSPHLL 155
TL+ L+S F+ ++GR C PR + PR L +L SPH+L
Sbjct: 324 TLLRNLTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNYLTSPHVL 371
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 31.9 bits (69), Expect = 0.49
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +2
Query: 338 TASSLMKTSATFSGT-AGTEKPPAI-SAAPDLPTTESPASACGLIRFRSAKTKK*QTDSA 511
T SS+M++SAT GT A + P A+ SA P P T +P + S T + TDSA
Sbjct: 152 TDSSMMQSSAT--GTQAAVQGPSAVASAVPMTPVTAAPTTV------PSTTTARAGTDSA 203
Query: 512 AQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSEP 637
T S V + P + V T+ S+ +AP P
Sbjct: 204 IAVASAGSTTV-STVAVAPSLPVAPTAASQ---GQALAPQTP 241
>04_01_0615 - 8060085-8060972
Length = 295
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +2
Query: 401 PAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAV 580
P +A P LP++ A+ + S+ QP V +P+ S + +
Sbjct: 70 PLATAPPSLPSSLFAATVEETVMTASSPLPLPHPAEVLQPLVAAPSSQMSFASKAAAVLP 129
Query: 581 NITSVSRALPASTVAPSEP 637
+T+V ALP + PS+P
Sbjct: 130 CLTTVGPALPGAPSTPSQP 148
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +2
Query: 275 LSAERGHSLSPQSPLLTVR-DCTASSLMKTSATFSGT---AGTEKPPAISAAPDLPTTES 442
L+A H + P SP ++ D + +A S T A + PP+ ++A L T
Sbjct: 15 LAATSWHCVHPPSPTVSTHWDAASHEARGAAAASSPTSPRAASTNPPSATSAEPLHTCVF 74
Query: 443 PASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLAR 547
S G R + Q A+P + +P LAR
Sbjct: 75 SGSVAGPSRQAALSYLTTQPSRMARPLLAAPHLAR 109
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 484 NEEVANGFGCPAPGEVSNAGSFSRHAH----PEDCRKYYIC 594
N + AN + CP PGE + S +++ ++ R Y+C
Sbjct: 275 NNQAANNWSCPTPGEARRSACISNNSYCHNVTDNYRSGYVC 315
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 290 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPAS 451
G + +PQ+ +VR CT+ SL + SA GTA T + A SA +T S +S
Sbjct: 47 GGTPAPQAAASSVRRCTSPSLSRASAA-EGTASTNR--AQSAERRRSSTPSSSS 97
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 29.5 bits (63), Expect = 2.6
Identities = 33/130 (25%), Positives = 45/130 (34%), Gaps = 3/130 (2%)
Frame = +2
Query: 278 SAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPP--AISAAPDLPTTESPAS 451
+A S P SP + R+ S S S T T P S+ P++ P
Sbjct: 10 TASASSSYGPTSPPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLP 69
Query: 452 ACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSR-ALPASTVAP 628
T + PP SPT + SA +L P S S+ + P S P
Sbjct: 70 PLQPTPPPLPPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSKCSAPTSAQTP 129
Query: 629 SEPFSRSETP 658
+ S S P
Sbjct: 130 TRFLSSSSPP 139
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 298 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRCRRFSVRLHRCRTSSI 161
A SSL T S S R ++ +WR+ R+ R+FS ++C +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 277 ECGERTQLEPPISTPHCSRLYGIF 348
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 29.1 bits (62), Expect = 3.5
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +2
Query: 440 SPASACGLIRFRSAKTKK*QTDSA-AQPPVRSPTLARSAVTLIPK-IAVNITSVSRALPA 613
SP+ A L R + T + + A A PP S AR VTL P+ +A T+ + A P
Sbjct: 175 SPSGAWSLRDVRGSPTGSIEVELASAAPPEASGVEARCVVTLHPEALATEFTARNAASP- 233
Query: 614 STVAPSEPFS---RSETPTA 664
S VA S S R TP A
Sbjct: 234 SPVALSAAVSTHLRVSTPDA 253
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 283 RTQRCEGSRSSRSSIWNLWRRKRDR 209
R RC G ++RS+ LWRR+R R
Sbjct: 20 RVSRCSGRPATRSAPSILWRRRRPR 44
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +1
Query: 382 CWNGEASRYQCSPGLAYDRESRVCMWADQVPECKNEEVANGFGCPAPGEVSNAGSFSRHA 561
CW G + RY+CSP VCM ++P + + P EV + G H
Sbjct: 77 CWRGLSRRYKCSPERTV---LSVCMLTGEMPRVQTSRLGKN-----PIEVDSDGGEDLHV 128
Query: 562 HPE 570
E
Sbjct: 129 DYE 131
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 307 GAQAVSSLRTQRCEGSRSSRSSIWNLWRRKRDRCRR 200
G V + +R EG S + W WRR+R RC R
Sbjct: 108 GGGGVGWMGMRRAEGGGSGSVARWRRWRRRR-RCGR 142
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +2
Query: 212 VSLSTPQIPNXXXXXXXXXXXLSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGT 391
+ S+P +PN AER +LS Q+P+++ + S M S G
Sbjct: 290 IGRSSPSVPNPPLGPR------GAERSSNLSSQTPVISSSGLSYGSGMHVGNANSRVNGN 343
Query: 392 EKPPAISAAP---DLPTTE 439
P + P D+P TE
Sbjct: 344 SVQPTVELLPSFKDVPNTE 362
>03_02_1009 +
13189349-13189592,13189782-13189882,13191085-13191090,
13191712-13191933,13192052-13192137,13192330-13192426,
13192817-13192909,13193031-13193186
Length = 334
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 275 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDL 427
L RG SP P T+S SAT +GT G + PP + + PD+
Sbjct: 33 LGLSRGAGPSPPPP---PSSSTSSFPAAASATAAGTGG-DAPPIVGSCPDM 79
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +2
Query: 356 KTSATFSGTAGTEKPPAISAAPDL-PTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRS 532
K T GT++PP I +P P SP + I S + +PPV S
Sbjct: 191 KNDIELGSTDGTDRPPRIPVSPSRPPVVASPRDS--PIASPSRPEPPVASPPGPEPPVAS 248
Query: 533 PTLARSAVTLIPKIAVNITS 592
P + V P + + S
Sbjct: 249 PPVPEPQVASPPVLEPPVAS 268
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/52 (26%), Positives = 19/52 (36%)
Frame = +1
Query: 514 PAPGEVSNAGSFSRHAHPEDCRKYYICLEGVAREYGCPIGTVFKIGDADGTG 669
PAPG + A H+HP C+ +C G +G G G
Sbjct: 9 PAPG-LLRAACLRSHSHPLQCKALELCFNVALNRLPASAGASPLLGHGHGVG 59
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -3
Query: 660 VGVSDLEN--GSDGATVLAGNALETDVIFTAIFGMSVTAERASVGD 529
+G +D +N GS + N +E+D + +A+ GM++++ RA G+
Sbjct: 274 LGATDKKNNVGSSSFNCSSPNIIESDDLVSALSGMNLSSSRAMNGN 319
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 27.9 bits (59), Expect = 8.0
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +2
Query: 398 PPAISAAPDLPTTE-----SPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLARSAVT- 559
PP A+P +PTT+ PA+A S + A QPP +P ++AV+
Sbjct: 113 PPDSGASPSVPTTKRVDTLPPAAADKAAISPSIPVPVRKRVHAPQPP-PAPAPEKAAVSP 171
Query: 560 LIPKIAVNITSVSRALPASTVAPSEPF 640
IP A S + A A+ +P PF
Sbjct: 172 SIPVPAKKRVSATAAAAATDASPRVPF 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,331,535
Number of Sequences: 37544
Number of extensions: 463639
Number of successful extensions: 1917
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -