Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0047
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    28   5.6  
03_03_0012 + 13737898-13740031,13740347-13740486                       27   9.8  
02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62...    27   9.8  

>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 299 SHRSLRNTIHSQYCSDSSFPESTRYSG 379
           S+R  R +   +Y SDSS PE  R+SG
Sbjct: 515 SNRHSRRSREKRYYSDSSSPEHNRHSG 541


>03_03_0012 + 13737898-13740031,13740347-13740486
          Length = 757

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
 Frame = +3

Query: 174 LHWPFDCRVGHRCPTRRTEVIMSISVTRRLHGLLLFVNVC--FSLIDLLEIRFILSIVRI 347
           +HWP D       P    + I++I    + + +    +VC  FSL  LL+ RF     R 
Sbjct: 209 VHWPLDKSKAKFLPQSSPDDIITIDKILQCNEVHFLSDVCLSFSLSHLLQRRFYR--FRC 266

Query: 348 RLSQSLLD---IPAPLITSKST*LLQYLKIFFSCRVKYLFSLDFYIQEITKSAHLIFHTL 518
             S+ L+    +   L+ S+    + Y ++F    V+  F  D +    T +A L ++  
Sbjct: 267 AESKHLVARKFLFEGLLMSRDA-AIDYKRVFNVIEVELSFLYDIF---FTSNAFLHYYE- 321

Query: 519 CQTVIIWG 542
            ++  IWG
Sbjct: 322 SKSTTIWG 329


>02_01_0087 +
           623174-623421,623576-623693,624266-624588,625267-625551,
           625643-625823,625964-626119
          Length = 436

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 156 YYA*EKLHWPFDCRVGHRCPTRRTEVIMSISVTR--RLHGLLLFVNVCFSLIDLLEIRFI 329
           YY     HW F         T     I  I  +R  RL GL+++V   +S++   E RF+
Sbjct: 268 YYGTHVFHWYFSQGFPSMIWTFLPFSISGIMKSREWRLAGLIVWVLAVYSILGHKEFRFV 327

Query: 330 LSIV 341
           L ++
Sbjct: 328 LPVL 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,047,738
Number of Sequences: 37544
Number of extensions: 314486
Number of successful extensions: 526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)