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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0038
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237...    29   4.1  
01_06_1638 + 38812226-38812660,38812989-38813063,38813180-388132...    29   4.1  

>06_03_1309 + 29223197-29223240,29223358-29223592,29223695-29223783,
            29223870-29223968,29224065-29224158,29224297-29224514,
            29224861-29224967,29225298-29225472,29225596-29225743,
            29226548-29226596,29228016-29228162,29229990-29229996,
            29230417-29230482,29230773-29231991,29232073-29233149,
            29233226-29233355,29233519-29233617,29233817-29233878,
            29234429-29234533
          Length = 1389

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/58 (39%), Positives = 28/58 (48%)
 Frame = -3

Query: 468  SLIKCYEHDKCRLIGHNNEKRPKHSRGQ*KSTTVDCLIVIFHVIKAYNRLAINTNSES 295
            S+I+C    KC+ IGHN     KH  G   S+T D L V   V  A N +  NT   S
Sbjct: 1180 SIIRC---SKCKQIGHNKSTCNKHHGG--GSSTPDSLQV---VNPADNLMLSNTQQSS 1229


>01_06_1638 +
           38812226-38812660,38812989-38813063,38813180-38813284,
           38813387-38813472,38813554-38813674,38813761-38813840,
           38814005-38814067,38814205-38814326,38814429-38814514,
           38814626-38814750,38814883-38814911,38815188-38815333,
           38815643-38815822,38816445-38816585
          Length = 597

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 80  GINCMFVF*CAFHCNENTTWNRVKK 154
           G++CM  F C +HC  N + +  KK
Sbjct: 448 GLSCMNAFLCTYHCEANASLSVKKK 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,076
Number of Sequences: 37544
Number of extensions: 295135
Number of successful extensions: 478
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).