Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0111
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 36 0.042
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 35 0.074
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 34 0.13
10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220... 31 0.91
05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447 30 2.1
03_05_0540 + 25375261-25376931 30 2.1
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 2.8
01_05_0136 + 18478227-18478254,18478514-18479113,18479344-18479684 29 2.8
01_06_0922 - 33022709-33023545 29 4.9
12_02_1281 + 27523411-27523561,27523725-27523810,27524653-275247... 28 6.4
11_06_0434 - 23512921-23513529 28 6.4
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 28 6.4
03_06_0195 + 32256771-32258792 28 6.4
01_05_0798 - 25322213-25322333,25322536-25322816 28 6.4
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 28 8.5
04_04_0558 - 26231752-26231837,26231929-26231974,26232059-262321... 28 8.5
01_06_1584 - 38441654-38442847 28 8.5
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 35.5 bits (78), Expect = 0.042
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +1
Query: 172 TLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARDFKHYRLADMLSDHMKI 351
T LHWAA G VC L+ G + +++ TP +LA D H L+ +LS+ K+
Sbjct: 208 TPLHWAAIRGNYEVCTVLVHA-GTKEELTLKDSGGFTPVELANDKGHRHLSYILSNATKV 266
Query: 352 SEFSNMY 372
+ F + Y
Sbjct: 267 T-FEDKY 272
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 34.7 bits (76), Expect = 0.074
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +1
Query: 172 TLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRH-----RTPADLARDFKHYRLADMLS 336
T LHWAA G ER L+ G AA A+ + RTPADLA H +A L+
Sbjct: 683 TALHWAASCGRERTVGVLIA--NGAAAGALTDPTSEFPSGRTPADLASTNGHKGIAGFLA 740
Query: 337 DHMKISEFSNMYYYLKNMSDNEKQD 411
+ S S + LK D+ ++
Sbjct: 741 ESALTSHLSAL--TLKESKDSNAEE 763
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 172 TLLHWAARFGLERVCWQLLECPGGGAAIA---MRNVRHRTPADLARDFKHYRLADMLSDH 342
T LHWAARFG E LL+ A++ ++ +TPA +A + L+ LS+
Sbjct: 500 TALHWAARFGREETVVLLLDAGAAAGALSDPTAQDPAAKTPASVASAYGFKGLSAYLSEA 559
Query: 343 MKISEFSNM 369
I+ ++
Sbjct: 560 ELIAHLHSL 568
>10_06_0169 +
11420115-11420163,11420922-11421041,11421938-11422053,
11422125-11422213,11422413-11422455,11423296-11423440,
11423581-11423688,11423767-11424086,11424255-11424671,
11424776-11425470,11425564-11426107,11426338-11426682,
11426799-11426909
Length = 1033
Score = 31.1 bits (67), Expect = 0.91
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +1
Query: 172 TLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRH---RTPADLARDFKHYRLADMLSDH 342
T LHWAA G ER L+ A+ + + TPADLA H ++ L++
Sbjct: 691 TALHWAAFCGRERTVVALIALGAAPGALTDPHPNYPAESTPADLASANGHKGISGFLAES 750
Query: 343 MKISEFSNMYYYLKNMSD 396
S + NMS+
Sbjct: 751 SLTSHLQALNLKEANMSE 768
>05_03_0173 - 9210279-9210764,9210877-9211605,9213286-9213447
Length = 458
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 436 EEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEISDNSDES 588
EE+ + C T PI + E + +SP +P +++EE ++ DES
Sbjct: 297 EEESPPLSLCCTEPLPIPKPSEAVMAISPFEPPESIFDESIEEFNEREDES 347
>03_05_0540 + 25375261-25376931
Length = 556
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 139 KADVSSGEEYPTLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARDFKH-Y 315
+AD G + T LH AAR G + V +L+ G A+R+ +T ++A + H
Sbjct: 311 RADARCGADGGTALHAAARRG-DEVIARLILANGAAGTAAVRDAAGKTAFEIAAEECHGG 369
Query: 316 RLADML 333
R+ D L
Sbjct: 370 RIMDFL 375
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 162 GISYSAALGGS-FRAGACLLAAARMSRGRSRN 254
G + AA GG RAGACL AAA S +R+
Sbjct: 412 GCGFCAAGGGDKLRAGACLAAAAAASNATARD 443
>01_05_0136 + 18478227-18478254,18478514-18479113,18479344-18479684
Length = 322
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 481 PICEDPEQDVIVSPPDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNEL 657
PI + E+ + +SP +P ++++E ++ DE E+ + LPK+ +Q EL
Sbjct: 250 PIPKSIEEVMAISPFEPLDSNLDESIKEFNEGDDEYEE----TIDLPKMDQQSRAPIEL 304
>01_06_0922 - 33022709-33023545
Length = 278
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 305 KSRAKSAGVRCRTFRIAIAAPPPGHSSSCQQTRSSPKRAAQ 183
++ A + GVR R+ R A A+PPP + R SP AA+
Sbjct: 149 RAAAAAYGVRSRSAR-ASASPPPRREQRDRSVRRSPSPAAK 188
>12_02_1281 +
27523411-27523561,27523725-27523810,27524653-27524718,
27524801-27524971,27525365-27525535,27525620-27525739,
27525868-27526014,27526193-27526264,27526359-27526832,
27526914-27527086,27527194-27527230
Length = 555
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 385 NMSDNEKQDK-TEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLE 561
N+S + +DK + + K + +ET DTV + + +++VI + C + +
Sbjct: 422 NVSTDSSEDKESNNSDEKANEFTSVETEDTVSGLLYDTLQKEVIA-----LRKACHEKDQ 476
Query: 562 EISDNSDESEKQSRASFKLPKVKEQQ 639
+ D D E ++ L K E +
Sbjct: 477 SLKDKDDAVEMLAKKVDTLTKAMESE 502
>11_06_0434 - 23512921-23513529
Length = 202
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 337 DHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQD 507
D K + F+ +++ + M+D+E+ D ++ + EED E D D+ E+ D
Sbjct: 121 DQDKAATFTAVHWKEELMTDDEEDDDDDDEDESEEDDEFDEKEDDSDNEDDEESSDD 177
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 289 DLARDFKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCD 468
DL DF++ L E + +++Y N D E S+ E+L + T
Sbjct: 79 DLLSDFEYELQPPYLLYRNAAQEVNGIWFY--NQHDCEAVASLFGRSSEFEELEAVPTSA 136
Query: 469 TVDSPICEDPEQDVIVS-PPD 528
+D P+ P IVS PD
Sbjct: 137 AIDGPLEPSPATTTIVSDAPD 157
>03_06_0195 + 32256771-32258792
Length = 673
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 391 SDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEIS 570
SD+++ ++ E E+DL + D C D E + PD S + EE S
Sbjct: 218 SDSDEDTESTESSHDEDDLDDDDESLDDDGSECFDEEDKIGTENPDDESVDTGSSDEEES 277
Query: 571 DNSDES 588
D+ ++S
Sbjct: 278 DDEEDS 283
>01_05_0798 - 25322213-25322333,25322536-25322816
Length = 133
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +1
Query: 511 IVSPPDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQ 690
+V+PP P Q E SD+ D + S LP +P DD D Q
Sbjct: 25 LVAPPPPPPPPNNQESESDSDSDDGQKSDSSDDEALPVPNPALQANKNVPPSDDDEDDDQ 84
Query: 691 QAIEND 708
++ D
Sbjct: 85 ESDSGD 90
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/88 (25%), Positives = 33/88 (37%)
Frame = +1
Query: 400 EKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEISDNS 579
+K K E +++D E D D ED DV P + ++ S+NS
Sbjct: 189 KKPTKYNAYEDEDDDEYNDENDDEDDDDADEDDPDDVDFEPESDTEKAADKDKFVDSENS 248
Query: 580 DESEKQSRASFKLPKVKEQQLYQNELPC 663
DE E +L E +N+ C
Sbjct: 249 DEEEDD---ELELSDDDEDDFVENKRQC 273
>04_04_0558 -
26231752-26231837,26231929-26231974,26232059-26232139,
26232250-26232336,26232459-26232548,26232650-26232841,
26232973-26233179
Length = 262
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -1
Query: 299 RAKSAGVRCRTFRIAIAAPPPGHSSSCQQTRSSPKR 192
R SAG RCR F A + PP SPK+
Sbjct: 27 RTHSAGARCRGFAAAHSQPPAAGRPDEPAAEPSPKQ 62
>01_06_1584 - 38441654-38442847
Length = 397
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 535 SETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQN 651
S Q+ EI NSD S K+ SF+ ++E QL Q+
Sbjct: 320 SLVANQSFREIERNSDTSTKRGSISFR-TMIREDQLQQD 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,250
Number of Sequences: 37544
Number of extensions: 411475
Number of successful extensions: 1697
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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