Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0094
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56...    33   0.20 
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798     30   2.4  
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924...    29   4.2  
11_04_0391 + 17127309-17127449,17127886-17127950,17129209-171293...    28   9.8  
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587...    28   9.8  
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859...    28   9.8  
01_01_1027 - 8132081-8132344,8133534-8134394                           28   9.8  

>01_01_0074 -
           561304-562131,562219-562425,563034-563084,563310-563408,
           564476-564622,564750-564851,565713-565928,566061-566192,
           566249-566310,567618-567746,568426-568567,568735-568830,
           568924-569000,569070-569148,569229-569297,569589-569703,
           570614-570777,570847-571002
          Length = 956

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 529 LLQMQRKRKILKKFGVPQLELRLLLIIKIHMLLSTLYKPS-NYFEKLEGFLSMIHIYRLY 705
           L   ++   +  KFG+PQ  +R L I    +LL+TL  P     +K  G +  I      
Sbjct: 684 LRSTEQGEMVQAKFGLPQTSVRQLEIYTTAVLLATLRPPQPPRDDKWRGVMEEISRVSCA 743

Query: 706 KYLSEVETKQTFGKFFQ 756
           +Y S V     F K+FQ
Sbjct: 744 QYRSTVYENPEFIKYFQ 760


>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
          Length = 289

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +3

Query: 408 NKDSHKKYYHTVTGASSRKYSPITRVMDIFRSK-PHSENNQTPAD-AAKKKNSKEVRRSS 581
           +K +  +  H V+G    K +P  +      SK P  E  Q  A  +   K +KE +R +
Sbjct: 92  HKGAKSEKPHRVSG-EGEKPTPTKKKKKKESSKEPKREKQQASAPMSTPSKKNKEAKRDT 150

Query: 582 IGTTSPTYHKNSYASLDPVQAK 647
            G   PT  K     +DP Q +
Sbjct: 151 GGAGKPTPTKRKLGDVDPPQER 172


>02_02_0350 +
           9239138-9240218,9240755-9240906,9241392-9241457,
           9242715-9242951
          Length = 511

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 154 DSTPLVPKWTVCTLLSATLLEGTFSSDV 71
           DS   V   T+C+LL+ATL+E  F+SD+
Sbjct: 373 DSISAVFVETICSLLAATLIELRFTSDL 400


>11_04_0391 +
           17127309-17127449,17127886-17127950,17129209-17129305,
           17129729-17130193,17130505-17130528
          Length = 263

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 253 RSTEHHLVQKVLFLIYFALEEKAMLKRHQNNNNQKRPKT 369
           +S + HL+ K  F   F   +KA   + Q N NQK+ +T
Sbjct: 117 KSRQQHLLDKHQFPKSFEFFKKARPSQRQRNKNQKQRQT 155


>07_03_1526 +
           27456426-27456700,27457936-27458023,27458129-27458725,
           27458731-27460056,27460283-27460729
          Length = 910

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 248 IFFATRISICTRRTSCFYRTIFKNRSHMRPLGF 150
           IFF     I TR     Y+  F+ R   RPLG+
Sbjct: 85  IFFLEATRIFTRNNMLDYQLFFRTRGAFRPLGW 117


>05_03_0667 +
           16781857-16782001,16784506-16784544,16785229-16785910,
           16786003-16786087,16786747-16786888,16787391-16787575,
           16788011-16788143,16788317-16788405,16788530-16788604,
           16789060-16789173,16789264-16789305
          Length = 576

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 564 EVRRSSIGTTSP-TYHKNSYASLDPVQAKQLFREVRGLPKY 683
           + RR+S     P T ++  YA+LD V    +F  V+G P++
Sbjct: 509 KTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHHVKGQPQF 549


>01_01_1027 - 8132081-8132344,8133534-8134394
          Length = 374

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 388 SSFEISW--FSVVFDCCCFDAFLASLFLLMRNISKIELF 278
           S   ++W   S  FD CC   F  SLFL    +S+  LF
Sbjct: 256 SMASLAWDAISASFDTCCKMLFFLSLFLFASLVSRPTLF 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,528,151
Number of Sequences: 37544
Number of extensions: 347327
Number of successful extensions: 921
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)