Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0061
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 33 0.082
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 31 0.25
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 28 2.3
11_06_0549 + 24868344-24868930,24869740-24869957,24870018-248701... 28 3.1
02_02_0185 - 7590355-7590669 28 3.1
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 27 4.1
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 27 4.1
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 27 5.4
11_06_0356 - 22654329-22654571,22654695-22654898,22655065-226553... 27 7.1
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443... 27 7.1
>02_05_0689 -
30937621-30937665,30938143-30938208,30938303-30938356,
30938489-30938560,30938648-30938743,30939883-30939960,
30940485-30940564,30940662-30941343
Length = 390
Score = 33.1 bits (72), Expect = 0.082
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 182 KVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIE 361
+ TA + A + ST P+ H +D P+ T T + L + ++++RR+E
Sbjct: 16 QATALIAARSISDSTAPLTIETSVPFTSHIVDP-PSRDVTTTPAELLTFFRDMSVMRRME 74
Query: 362 TG*GNLYKEK 391
+LYK K
Sbjct: 75 IAADSLYKAK 84
>06_01_0981 +
7613381-7614086,7614203-7614282,7614883-7614960,
7615166-7615261,7615370-7615441,7615676-7615729,
7615819-7615884,7616291-7616335
Length = 398
Score = 31.5 bits (68), Expect = 0.25
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 254 PYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETG*GNLYKEK 391
PYK H +D P AT T+ + + ++ +RR E +LYK K
Sbjct: 48 PYKSHIVDPPPREVAT-TARELATFFRDMSAMRRAEIAADSLYKAK 92
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 200 VATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLY 331
+ TN S + + F+ K H DQ + S + ++E+A+KLY
Sbjct: 486 IETNKLRSRRSQEFFQTPEKKTHTDDQKHSESMSNSAENAIKLY 529
>11_06_0549 +
24868344-24868930,24869740-24869957,24870018-24870175,
24870202-24870633,24870717-24871064
Length = 580
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 182 KVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALK 325
K P+ AKY + F + K HK+ + AT+A T+ L+
Sbjct: 236 KTEFPIHLDQAKYESILREVFPLATSKPHKVQEAAATAAAATTAATLE 283
>02_02_0185 - 7590355-7590669
Length = 104
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 213 QNTARKKRRHSKSSPTNSINWIRALQHQP 299
+ A +RRH+ +S + W R L+H+P
Sbjct: 18 EGAADDQRRHAMASAAAEVPWRRVLRHRP 46
>10_08_0850 +
21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 292 CCRALIQFMEFVGLDFECRLFFRAVFCVCRYNRCSHFRDC 173
C R+ + +M V L C +FF +C + C+ FRDC
Sbjct: 480 CLRSSLMWMGAVELSLVCSVFF-----ICEWATCT-FRDC 513
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 252 LISNVASFFVLYFAFVATTGAVTFVIVFPAKNL 154
++S A F+ + F F+A GA FV+ +P +N+
Sbjct: 183 VLSREALFYTVIFPFIAFFGAFAFVL-YPLRNV 214
>09_02_0152 +
5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 27.1 bits (57), Expect = 5.4
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Frame = +2
Query: 140 IPSAAK-FLAGNTITKVTAPVVATNAKY-STKKEATFEIKPYKLHKLDQGP-----ATSA 298
+PSA F +G I + + + A + + ST +T E PY+ L GP A +
Sbjct: 342 LPSATSAFHSGGVIPNLRSSLAANPSGFLSTSTSSTVEETPYRTRPLSGGPLSKLQAPRS 401
Query: 299 TLTSEDALKLYEQLTILRRIETG*GNLYKE 388
+ +D + ++ L ++ G+L+ +
Sbjct: 402 NFSLKDDMDVFSPLVDVQPFTPSSGSLWDD 431
>11_06_0356 -
22654329-22654571,22654695-22654898,22655065-22655319,
22655435-22655626,22655738-22656046,22656149-22656355,
22656450-22656527,22657493-22657747,22657850-22658000,
22658269-22658500,22658631-22658886,22658960-22659091
Length = 837
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 234 RRHSKSSPTNSINWIRALQHQPHSLLKMLLSCMNN*RY 347
RR +++PT + I +LQ Q + L+M L C+ R+
Sbjct: 264 RRFQQTTPTYTSEEIGSLQRQVKTCLEMALQCVEADRH 301
>11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,
4430555-4432052,4432199-4432217,4432469-4432675,
4432814-4433065
Length = 1363
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 189 LHRL*RQTQNTARKKRRHSKSSPTNSINWIRALQHQPHSLLKMLLS 326
+ R+ R+ ++ RK++R S NS N + LQ QP + +++ S
Sbjct: 1183 VERMSREARSYNRKRKRTRSSLQINSGNLMLQLQQQPATGMELFWS 1228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,675,818
Number of Sequences: 37544
Number of extensions: 166179
Number of successful extensions: 397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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