Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0107
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 123 2e-28
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.19
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 2.3
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 29 3.1
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 5.3
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 29 5.3
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 28 7.1
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 7.1
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580... 28 9.3
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 123 bits (296), Expect = 2e-28
Identities = 71/174 (40%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
Frame = +3
Query: 45 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 215
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V + D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 216 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMN 395
D VDIV RL E F DKK + ++K Y+K L AKL+ ++ E FK N+
Sbjct: 60 VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIE 115
Query: 396 KVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 557
K +LG+ K+LQFF GESM DG + Y+ DG P ++F HGL+E K
Sbjct: 116 GATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 488 FHHGNHAITIHRLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 354
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 285 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 458
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 459 D 461
+
Sbjct: 1195 E 1195
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 81 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLN 257
+FS VDE I +E+ + G+I ++GF G D+AVE ++ V
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV-- 158
Query: 258 HRLVETYAFGDKKS--YTLYLKD 320
R+ E K S Y L L D
Sbjct: 159 -RVSEVRGIAGKASGTYVLVLLD 180
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 258 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 437
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 438 FFTGE 452
+ E
Sbjct: 237 VLSKE 241
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 150 TRAQGDIQIEGFNPSAEEADEGTDSAVESGVD--IVLNHRLVETYAFGD 290
TR+ +Q++GF PSA ++ +G+ + V S + IV +L +T G+
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGN 875
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 168 IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 296
+ I N S EE +E ++A VD+ LN +E +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 360 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 262
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>03_06_0724 -
35757228-35757323,35757837-35757893,35757983-35758075,
35758271-35758336,35758444-35758653,35758750-35759022,
35759112-35759251,35759330-35759471
Length = 358
Score = 27.9 bits (59), Expect = 9.3
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +3
Query: 111 VDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 290
VD ++ + T V + D + +G A+ + G + + + ++ R E D
Sbjct: 134 VDLILEQTTVGTVVKIADDEE-DGEGNGADGSSTGGNDDLFGLISVLNLGRYSEHRCMKD 192
Query: 291 KKSYTLYL---KDYMKKLVAKLEEKAPD 365
K Y L + KD KKL L +KAPD
Sbjct: 193 LKDYLLAVCGDKDTKKKLKQMLGDKAPD 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,693,076
Number of Sequences: 37544
Number of extensions: 336599
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -