Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0020
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    30   1.9  
12_01_0312 + 2349696-2350424                                           30   2.5  
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    29   4.3  

>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
            26901025-26901247,26901662-26901666,26901796-26901924,
            26902697-26902894,26903138-26903356,26903461-26903699,
            26903797-26903888,26904009-26904224,26904327-26904554,
            26904631-26904722,26904806-26904899,26905475-26905567,
            26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 514  PANNYDESGEDDGQYXPPQGEDDGLYRPEVXDRELLSGAHSLNIAASGNRL 666
            P  +YD S  + G Y   Q +D  LY  E   + L   AH LN A +   +
Sbjct: 1445 PEFSYDMSWLNKGSYMGSQIQDQKLYLEECLTKYLTKSAHLLNEAQAATEV 1495


>12_01_0312 + 2349696-2350424
          Length = 242

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 322 CTVXYSGQHXVHYYSWMQWFGCFDCC 245
           C +  +G H  H++   +W GC + C
Sbjct: 199 CAIPCAGNHSFHHHCITEWLGCSNVC 224


>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +1

Query: 454 PEPPANLNKVAYNTNIGXNAPANNYDESGEDDGQYXPPQGEDDGLYRPEVXDRELLSGAH 633
           PEP   L    Y +       +++   SG   G   PP  +   ++ P     +LLSGA 
Sbjct: 418 PEPVIKLAVQRYVSTSQRQKQSSSSSSSGFS-GNSGPPLLQLTAVFAPHASPEQLLSGAE 476

Query: 634 SLNIAASGNR 663
           S+ + A   R
Sbjct: 477 SVTVVAIDGR 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,418,608
Number of Sequences: 37544
Number of extensions: 262225
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)