Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b07
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601...    35   0.075
11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335           31   0.70 
08_01_0269 - 2172363-2172538,2172632-2172697,2172790-2172887,217...    30   2.1  
01_01_1124 + 8916863-8917090,8917745-8917936,8918115-8918280,891...    30   2.1  
06_01_0889 - 6807449-6809257                                           29   4.9  
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875...    29   4.9  
07_01_0516 - 3850252-3852870                                           28   6.5  
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146...    28   8.6  

>11_01_0727 -
           6010537-6010548,6011029-6011606,6011709-6011774,
           6011867-6011964,6013238-6013608
          Length = 374

 Score = 34.7 bits (76), Expect = 0.075
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 116 FPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 280
           FP P  +   + + Y++ LA+   +    K +++A+ST TY G    +  +MS K
Sbjct: 100 FPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQAVMTEEMSEK 154


>11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335
          Length = 776

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +2

Query: 497 LYDPAPVIQIAPGYGLAENFD 559
           LY PAPV   APGYG AE  D
Sbjct: 319 LYSPAPVCVCAPGYGRAEPSD 339


>08_01_0269 -
           2172363-2172538,2172632-2172697,2172790-2172887,
           2173442-2173791
          Length = 229

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 104 ILAVFPT-PAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 280
           I+  FP  PA +   +   Y+  LA    ++   K  ++A+ST TY G    V+ + S K
Sbjct: 88  IVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEETSEK 147


>01_01_1124 +
           8916863-8917090,8917745-8917936,8918115-8918280,
           8918373-8918794
          Length = 335

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 418 AHVDIVKLVFEHFNQAQVVGGGYRVCIGHHSALSKHCR 305
           A+ D V L F+HF Q+ V  G      G    + K+CR
Sbjct: 291 AYADDVNLFFKHFAQSMVNMGNISPLTGSQGEIRKNCR 328


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 329 VVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIA-NNQTFDLVVVEAFADYALVFGHL 499
           VVS T  V     LGL++  ++ FD +  RNL++ N+     V  + F D   VF  +
Sbjct: 164 VVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEM 221


>04_04_1099 -
           30886361-30886591,30886739-30886941,30887030-30887555,
           30887751-30887988,30888592-30888695,30888784-30889059,
           30889216-30889218
          Length = 526

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 396 WSLNISIKPR*LAAVTVSVSDTTPRFLNIAEFVTSFLYCLTDMSELTSVILPQ*VLVEYA 217
           W L +S  P  +  +   ++  +PRFL +   VT  +  L  M+ L +V LP   LV   
Sbjct: 217 WLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDK 276

Query: 216 N 214
           N
Sbjct: 277 N 277


>07_01_0516 - 3850252-3852870
          Length = 872

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 323 RGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANN 436
           + V+S T  +      GL++M  D FD + VRN +  N
Sbjct: 317 KDVISWTGLLNGYMEFGLVDMAMDVFDRMPVRNFVTYN 354


>12_01_0199 -
           1467137-1467172,1467302-1467391,1468304-1468396,
           1468488-1469515,1470005-1470552,1470656-1470695,
           1473774-1475196
          Length = 1085

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 497 LYDPAPVIQIAPGYGLAENFD 559
           LY PAPV   APGY  A+  D
Sbjct: 311 LYSPAPVCVCAPGYARADPSD 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,365,526
Number of Sequences: 37544
Number of extensions: 441438
Number of successful extensions: 1099
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)