Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a23
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          222   1e-58
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   210   3e-55
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289          134   5e-32
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    42   2e-04
11_01_0526 - 4140853-4141017,4141416-4141619                           28   3.4  
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910...    27   7.9  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  222 bits (543), Expect = 1e-58
 Identities = 103/130 (79%), Positives = 118/130 (90%), Gaps = 1/130 (0%)
 Frame = +1

Query: 58  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 414
           IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 415 LGGKILGFFF 444
           +GGK+LGFF+
Sbjct: 121 VGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  210 bits (514), Expect = 3e-55
 Identities = 99/126 (78%), Positives = 113/126 (89%), Gaps = 1/126 (0%)
 Frame = +1

Query: 58  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 237
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 238 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKH 414
           IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 415 LGGKIL 432
           +GGK L
Sbjct: 121 VGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score =  134 bits (323), Expect = 5e-32
 Identities = 58/124 (46%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 252
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 253 TGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 429
            GR+  C  ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG++
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124

Query: 430 LGFF 441
           LG+F
Sbjct: 125 LGYF 128


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +1

Query: 214  VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 315
            VDDH++G+I++   GRLNK GVIS R DV +  +
Sbjct: 912  VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945


>11_01_0526 - 4140853-4141017,4141416-4141619
          Length = 122

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 232 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 327
           G++   +   LNKCGVI+P     I+D+   T
Sbjct: 78  GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109


>03_03_0226 +
           15590276-15590469,15590515-15590539,15590865-15591014,
           15591166-15591594
          Length = 265

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 232 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 327
           G++   +   L+KCGV++P     I+D+   T
Sbjct: 83  GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,784,009
Number of Sequences: 37544
Number of extensions: 226336
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)