Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a15
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191...    28   1.2  
03_01_0090 + 718746-719998,720089-720161,720198-720254                 27   1.6  

>07_03_1752 -
           29218348-29218524,29218593-29218736,29218957-29219148,
           29219225-29219440,29219873-29220010,29220137-29220232,
           29221204-29221357,29221976-29222098,29222291-29222418,
           29222669-29222773,29223396-29223437,29223631-29223746,
           29223805-29223916
          Length = 580

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 132 FHIYKPIFSTFVENRIKIIMS 70
           F+++K I+STFV   +KII S
Sbjct: 315 FYVHKDIYSTFVSQVVKIIKS 335


>03_01_0090 + 718746-719998,720089-720161,720198-720254
          Length = 460

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 61  WLATHYYFDSVFHKCAKYGLIYMKRNK 141
           W A+ +YF+ +F   A  G +YM R++
Sbjct: 226 WRASSWYFNQIFSPLAFQGKLYMVRHE 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,382,258
Number of Sequences: 37544
Number of extensions: 63005
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)