Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0024
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    31   0.99 
10_08_0871 - 21181798-21181917,21182024-21182065,21182162-211821...    28   5.3  
10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373...    28   7.0  
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    28   7.0  
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426...    28   7.0  

>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 531 FLYINQPINCKLLFKVFDVFSDIHANVFPA 442
           F Y++ P++   LFK++D F   H N+F A
Sbjct: 510 FSYLDLPVDYMDLFKLYDPFGGDHLNIFAA 539


>10_08_0871 -
           21181798-21181917,21182024-21182065,21182162-21182191,
           21182227-21182328,21182414-21182512,21182824-21182884,
           21183447-21183568,21183673-21183758,21183880-21183964,
           21184125-21184208,21184292-21184371,21184722-21184785,
           21184859-21184927,21185263-21185343,21185438-21185578
          Length = 421

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/70 (21%), Positives = 30/70 (42%)
 Frame = +2

Query: 413 HFDIKDRLKLAGKTLAWISEKTSNTLNNNLQLIGWLIYKKYDQLLATSEELCTNTKFRIY 592
           H+ + DRL L  + LA +     + ++ +L   G L+Y     ++   E +         
Sbjct: 225 HYSMSDRLNLVDERLATLLTDDPSVIDTSLTHYGDLVYPDKSSIVHRLEVIDKCFSLETV 284

Query: 593 NEVIDLLNKE 622
            E++D +  E
Sbjct: 285 EEIVDAMEIE 294


>10_08_0511 +
           18435745-18436499,18436624-18436742,18436788-18437372,
           18438534-18438667,18439128-18439148,18439656-18439739,
           18439832-18440077,18440763-18440925,18441024-18441066,
           18441392-18441773,18442212-18442267,18442351-18442417,
           18442542-18442721
          Length = 944

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 35  ETGSMLESTSHATVRHSI-KFDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYT 211
           E+G+ +E +++  + H + K    D+ +QM ++     L L+  + NI+++ LL      
Sbjct: 361 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRND 420

Query: 212 QAADI 226
           +A D+
Sbjct: 421 EAKDL 425


>08_02_1143 + 24659105-24659386,24660171-24660272,24661259-24661521,
            24661775-24661874,24662080-24662238,24662327-24663147,
            24663299-24663618,24665831-24667398
          Length = 1204

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 65   HATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILL 181
            +AT++  ++    DE++Q+ +    YG+ LDD S N ++
Sbjct: 946  NATMKVLLRARLFDEVLQLFESSETYGVELDDISYNTVV 984


>01_06_0319 -
           28441082-28441102,28441630-28441701,28442568-28442627,
           28442918-28443105,28444300-28444327,28444880-28444907,
           28444942-28445163,28445238-28445409,28446224-28447468,
           28447573-28447741,28447820-28448045,28449096-28449451,
           28449530-28449724,28450655-28450864,28451729-28452004
          Length = 1155

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 398 PYFDDHFDIKDRLKLAGKTLAWISEKTSNTLNNNLQLI-GWLIYKKYDQLLATSEELCTN 574
           P FD+HF ++++ KL G+    I    +  L + L  +   L  ++ + +L T ++   N
Sbjct: 807 PLFDEHFSVEEQDKLVGRI---IGSTGAEVLQSMLPWVTSALTQEEQNMMLDTWKQATKN 863

Query: 575 TKF 583
           T F
Sbjct: 864 TMF 866


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,337,078
Number of Sequences: 37544
Number of extensions: 197842
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)