Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120045.Seq
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822...    29   3.4  
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701...    28   7.8  

>08_01_0841 +
           8223768-8223871,8227749-8228745,8228779-8228828,
           8228896-8230396
          Length = 883

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 36  VSNAANMVYICIDTGSHAKGYAVESSDTDYYIYTKCNRETFEKFIDNKELLKNRHAKDES 215
           VS + + V +  +    AKG   ES D  Y++     +E+FE+F +   + +N     E 
Sbjct: 293 VSRSGSQVIVTTEIVHVAKG-CTESDDHVYWVQLLSKQESFERFKNLILVTENSKMTHED 351

Query: 216 GNDVKYVDL 242
             D + +DL
Sbjct: 352 REDFEDLDL 360


>06_03_1511 -
           30669292-30669401,30669894-30669930,30670012-30670107,
           30670186-30670281,30670679-30670828,30670956-30671100,
           30671178-30671251,30671325-30671445,30671697-30671821,
           30671898-30672047,30672249-30672324,30672496-30672557,
           30672597-30672839,30673354-30673683,30673776-30673932,
           30674008-30674139,30674219-30674277,30674734-30674798,
           30674878-30675094,30675413-30675499,30675655-30675750,
           30675938-30676003,30676096-30676287,30676380-30676532,
           30676812-30677052,30677322-30677515,30678212-30678348,
           30678474-30678480,30678708-30678830,30679370-30679427,
           30680018-30680090,30680493-30681765
          Length = 1714

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 22/93 (23%), Positives = 40/93 (43%)
 Frame = -2

Query: 418 NFVSHQIINNFHHRHRHQLSYKLVQLQVFNTIFVFKIFTFTEHAQFGRFSSQNANNPVYK 239
           NF+  + ++   +RH          + +    F+  IF+F++H +     S   +  +Y+
Sbjct: 604 NFIGSEEVDLLVYRHLMSCDIDSALIPLILAKFIKSIFSFSQHWKHLCECSPEKHRLLYR 663

Query: 238 STYLTSLPDSSFACRFFKSSLLSINFSKVSRLH 140
            T L  L D    C   K++L   N  + S LH
Sbjct: 664 HT-LAELGD--LVCEVSKANLPRENVKQNSLLH 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,065,338
Number of Sequences: 37544
Number of extensions: 376493
Number of successful extensions: 925
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)