Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120003.Seq
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575... 31 0.94
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014... 31 1.2
06_03_1285 - 28993305-28993442,28993559-28993798,28993881-289939... 29 2.9
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927... 29 3.8
01_07_0137 - 41381294-41382433 29 3.8
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 29 5.0
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 28 6.6
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816... 28 6.6
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643... 28 8.8
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946... 28 8.8
>06_01_0770 -
5756200-5756741,5756790-5757286,5757356-5757782,
5757854-5757911
Length = 507
Score = 31.1 bits (67), Expect = 0.94
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 392 DTPPFYFINTRDNFRDNIAEHVFDMLLERHG 484
D P F+NT D+F I +H+ + + E+HG
Sbjct: 318 DQCPASFLNTSDDFTARIVDHMVEHIKEQHG 348
>04_03_0632 +
18200844-18200970,18201134-18201190,18201370-18201460,
18201545-18201705,18202176-18202303,18202386-18202523,
18202966-18203058,18203546-18203704
Length = 317
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT V P++Y FTIL +I ++I++K
Sbjct: 239 FNTAVVSPVYYVMFTIL--TIIANMIMYK 265
>06_03_1285 -
28993305-28993442,28993559-28993798,28993881-28993961,
28994370-28994429,28994523-28994628,28994861-28994921,
28995198-28995246,28995475-28995599,28995809-28995947,
28996432-28996503,28996615-28996742,28997037-28997136,
28997757-28997897,28998116-28998232,28998505-28998609,
28999037-28999153
Length = 592
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 463 HVTRKTWLV*KLSHCNTAFINSLIVNGFKYNQVD 564
H+ K W + + H +T+ + + GFK+N+V+
Sbjct: 553 HIENKGWTIQHVDHKDTSEKEEIRIRGFKFNKVE 586
>05_04_0402 -
20991628-20991755,20992461-20992578,20992670-20992762,
20992841-20992978,20993070-20993197,20993270-20993430,
20993548-20993638,20993731-20993787,20993986-20994139
Length = 355
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAV 523
FNT V PI+Y FT L ++ I+FK + Q++
Sbjct: 248 FNTAVVSPIYYAMFTSL--TILASAIMFKDWSGQSI 281
>01_07_0137 - 41381294-41382433
Length = 379
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 314 WPSLVFVSALMTCTVDKLCSK--LQTRTRKCLICSWLADLS*N*TFATR**SPRPQTC 147
W +L F + VD + K T +R+ + +W D S + ATR PRP+ C
Sbjct: 182 WTALWFPKWMQHKYVDVVYHKGAFYTASREAAVTAWAPDASSSGLHATRVTEPRPEKC 239
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 252 TTNSYSKMFDM*LVSRFILKLNFCNSLIEPTSTDLSIN 139
T SY K+ + + S F+L + L++P T+LSIN
Sbjct: 1092 TLQSYCKLLEYCVNSSFLLSPSHNQLLVQPMVTELSIN 1129
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT V PI+Y FT L ++ +I+FK
Sbjct: 233 FNTAVVSPIYYVMFTSL--TILASVIMFK 259
>01_06_1512 +
37881055-37881229,37881388-37881444,37881537-37881627,
37881759-37881919,37882002-37882129,37882215-37882352,
37882665-37882757,37882858-37882975,37883064-37883194
Length = 363
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVDK 517
FN V PI+Y FT L ++ I+FK + Q+ K
Sbjct: 255 FNAAVVSPIYYAMFTTL--TILASAIMFKDWSGQSASK 290
>05_04_0366 -
20663243-20663388,20663467-20663572,20664275-20664367,
20664520-20664657,20664759-20664886,20664996-20665156,
20665277-20665367,20665460-20665516,20666288-20666444
Length = 358
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT V PI+Y FT L ++ +I+FK
Sbjct: 249 FNTAVVSPIYYTMFTSL--TILASVIMFK 275
>01_06_1567 +
38293612-38293795,38294467-38294523,38294609-38294699,
38294799-38294959,38295045-38295172,38295291-38295428,
38295717-38295809,38298219-38298324,38298393-38298517
Length = 360
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT V PI+Y FT L ++ +I+FK
Sbjct: 258 FNTAVVSPIYYTMFTSL--TILASVIMFK 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,795,755
Number of Sequences: 37544
Number of extensions: 309959
Number of successful extensions: 805
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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