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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060094.seq
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    82   5e-16
05_02_0056 - 6191998-6192057,6192132-6192320,6192492-6192649,619...    32   0.49 
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115...    29   2.6  
06_01_0096 - 794148-794246,795682-796975,798960-799417                 29   3.4  
01_06_0677 - 31104736-31104897,31105046-31105234,31105313-311054...    29   3.4  
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    28   6.0  
09_04_0527 - 18337968-18338077,18338440-18341212                       28   6.0  
11_04_0385 - 17022367-17022597,17022738-17022797,17022912-170229...    28   7.9  
09_04_0528 - 18348071-18348136,18348477-18351209                       28   7.9  

>03_02_0901 +
           12267042-12267182,12267949-12268095,12268163-12268253,
           12268367-12268485,12268779-12268969,12269440-12269650,
           12270072-12270309,12270944-12271329,12271933-12271956,
           12271984-12272077,12272341-12272525,12273025-12273255,
           12273665-12273730,12273816-12274034,12274764-12275003,
           12275244-12275423,12276269-12276535,12276612-12276815,
           12276896-12277048
          Length = 1128

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 36/55 (65%), Positives = 42/55 (76%)
 Frame = +2

Query: 509 VTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFEFLNICQVHG 673
           V+ K RR+  +EC ND+N MID AK ADL LLL D S+GFEM+ FEFLNI QVHG
Sbjct: 125 VSGKSRRVQFLECPNDINGMIDAAKIADLALLLIDGSYGFEMDTFEFLNIMQVHG 179



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/87 (33%), Positives = 48/87 (55%)
 Frame = +3

Query: 264 QRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGKTTL 443
           ++NPKAFA Q+A +A+R   R  ++  ++ H+P +D++  E              GK+ L
Sbjct: 43  RKNPKAFAFQSAAKAKRLQARSAEIEQRRLHVPIMDRSIGEPPPFVVVVQGPPQVGKSLL 102

Query: 444 INNLIKSFIKTNVTNTDGPITMSRLKS 524
           I  L+K + K N++   GPIT+   KS
Sbjct: 103 IKCLVKHYTKQNLSEVRGPITVVSGKS 129


>05_02_0056 -
           6191998-6192057,6192132-6192320,6192492-6192649,
           6193714-6193804,6193984-6194158,6194227-6194369,
           6194592-6194810,6194899-6195028,6195127-6195193,
           6195263-6195357,6195454-6195525,6195613-6195668,
           6196453-6196455,6197948-6198017,6198173-6198246,
           6198334-6198468,6200273-6200362
          Length = 608

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFE 646
           +R HY V   +    + + N D   +  +A C++L  L+ DA  GF  +++E
Sbjct: 384 QRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYE 435


>01_06_0872 +
           32609792-32610178,32611262-32611387,32611477-32611550,
           32611944-32612013,32612088-32612143,32612236-32612307,
           32612384-32612478,32612660-32612726,32612809-32612938,
           32613135-32613350,32613461-32613591,32614044-32614218,
           32614292-32614382,32614653-32614810,32615059-32615247,
           32615551-32615564,32616003-32616228
          Length = 758

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFE 646
           +R HY V   +    + + N+D   +  +A  A+L  L+ DA  GF  +++E
Sbjct: 474 QRYHYNVADARLHQHIEKGNDDGLFISSVASSANLWALIMDAGTGFTSQVYE 525


>06_01_0096 - 794148-794246,795682-796975,798960-799417
          Length = 616

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 147 FCWYFYLHLRIPILFP 100
           FC YF  HL +P+LFP
Sbjct: 105 FCSYFITHLLLPVLFP 120


>01_06_0677 -
           31104736-31104897,31105046-31105234,31105313-31105470,
           31105558-31105648,31105787-31105961,31106065-31106204,
           31106293-31106511,31106589-31106718,31107163-31107229,
           31107347-31107441,31107535-31107606,31107681-31107736,
           31107995-31108060,31108151-31108264,31108787-31109092
          Length = 679

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMID-IAKCADLVLLLCDASFGFEMEIFE 646
           +R HY V    R +  I+  N+    I  I  C++L  L+ DA  GF  +++E
Sbjct: 421 QRYHYNVADS-RLVQHIDKGNEDGLFISCITSCSNLWALIMDAGTGFTSQVYE 472


>09_06_0061 + 20596360-20596618,20597039-20597158,20597329-20597462,
            20597578-20597730,20597816-20597927,20598022-20598352,
            20598524-20598737,20598842-20598931,20599669-20599924,
            20600029-20600141,20600733-20600831,20600915-20600980,
            20601018-20601167,20601278-20601368,20601710-20601749,
            20603888-20605247,20605478-20605507,20605834-20605885,
            20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
 Frame = -3

Query: 672  PCT*HMFKNSNISISKPK---LASHR----SSTRSAHLAMSIIEFTSL 550
            PC  H+ ++ +  +  P+   LASH     ++TRS HLA+SI  F  L
Sbjct: 947  PCALHLLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRL 994


>09_04_0527 - 18337968-18338077,18338440-18341212
          Length = 960

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 524 RRITLIECNNDVNSMID 574
           RR++++ CNND+ S ID
Sbjct: 548 RRVSVLRCNNDIRSSID 564


>11_04_0385 -
           17022367-17022597,17022738-17022797,17022912-17022997,
           17023056-17023218,17023540-17023598,17023693-17023798,
           17023927-17023993,17024109-17024222,17024664-17025077,
           17025799-17025887
          Length = 462

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 500 HYYVTSKKRRITLIECNNDVNSMIDIAKC 586
           H  V  K R + ++E N +V +M+DIAKC
Sbjct: 82  HKMVQGKFRHLPVVE-NGEVIAMLDIAKC 109


>09_04_0528 - 18348071-18348136,18348477-18351209
          Length = 932

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +2

Query: 509 VTSKKRRITLIECNNDVNSMIDIAK-----CADLVLLLCDASFGFEMEIFEFLNICQVHG 673
           V S  RR+++++CN+++ S +D ++       D  + L  AS+ F     ++L + ++ G
Sbjct: 542 VGSDSRRVSVLQCNSEIRSTVDPSRLRTFLAFDTSMALSSASY-FIFSESKYLAVLELSG 600

Query: 674 M 676
           +
Sbjct: 601 L 601


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,509
Number of Sequences: 37544
Number of extensions: 284425
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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