Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021006
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0355 + 28657833-28660665,28660762-28661126                       29   3.3  
11_03_0099 - 9983044-9983052,9983145-9983939,9984031-9984301,998...    29   5.7  
03_05_0755 - 27462388-27463140                                         29   5.7  
02_04_0204 - 20893129-20893365                                         29   5.7  
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    28   7.5  
03_06_0459 + 34085134-34086269,34086471-34086717                       28   7.5  
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871...    28   9.9  

>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +3

Query: 534 HNYHYYWEIKMLTDTYGTDILIGVGS-NKV---NISDPQFTFTSLIGQDEESYGLSYTGA 701
           H    Y+E+   T+ + +D L+G GS  KV   N+ D Q     ++  D E   +S+   
Sbjct: 759 HRAISYYELVRATNNFNSDHLLGAGSFGKVFKGNLDDEQIVAIKVLNMDMERATMSFEVE 818

Query: 702 VRH-NS*SHQRLGRLL 746
            R      H+ L R+L
Sbjct: 819 CRALRMARHRNLVRIL 834


>11_03_0099 -
           9983044-9983052,9983145-9983939,9984031-9984301,
           9984857-9985056
          Length = 424

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 199 NNTNN*INGTFKENHCFY 146
           NN N+ ING FK+N C++
Sbjct: 163 NNLNDSINGNFKKNDCYW 180


>03_05_0755 - 27462388-27463140
          Length = 250

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +1

Query: 187 CWCCYKIWVLSCAFWRHI*CCREYATMESNNRKQVNSKYQARPYCPCWSKRSGPVPWKNL 366
           CWCC++      A  +     R+     S N   VN   QA P     +K +GPV ++  
Sbjct: 185 CWCCHRRRDQCAAVPQPARPVRQLPAAMSKN---VNGARQAAPAVSAAAKATGPVVFELE 241

Query: 367 NLCTCGE 387
           N   C E
Sbjct: 242 NRRACWE 248


>02_04_0204 - 20893129-20893365
          Length = 78

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 692 HGRRASQLLKSPETRSASVGGTIMESGSTC 781
           HG RA   L + ET  A  G T ME+G  C
Sbjct: 4   HGARAEGRLMAEETGEALGGATGMEAGEAC 33


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 534 HNYH-YYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGL 686
           H +H +Y   K L   +GT +L   G NK++  D    F  +I  D + +G+
Sbjct: 187 HFFHQHYGSTKPLISFFGTKLLSDKGVNKLSEDDVLRCFMVIIYLDFKDFGI 238


>03_06_0459 + 34085134-34086269,34086471-34086717
          Length = 460

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 680 RTLLHGRRASQLLKSPETRSASVGGTIM 763
           RTLL+   A+ +   PE R A++GGT +
Sbjct: 99  RTLLYDTAAAVVSNGPELRHATIGGTAL 126


>10_08_0854 +
           21086253-21086258,21086320-21086480,21087065-21087175,
           21087275-21087329,21087796-21087963,21088232-21090082,
           21090355-21090690
          Length = 895

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 226 THNSKPKFCNNTNN*IN-GTFKENHCFYR 143
           T +SKPKFC+  NN I+ G+ + N+   R
Sbjct: 632 TDSSKPKFCSAVNNSISRGSLERNNLMER 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,022,538
Number of Sequences: 37544
Number of extensions: 429628
Number of successful extensions: 1215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)