Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0004
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781...    29   4.1  
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358...    28   5.4  
09_03_0001 - 11373469-11373862,11374072-11374264,11374414-113744...    28   7.2  
01_06_1632 + 38763721-38764033,38764196-38764641                       28   7.2  

>09_04_0345 +
           16876489-16876614,16876718-16876876,16877989-16878102,
           16878701-16878882,16879142-16879241,16879597-16879638,
           16879818-16879994,16880084-16880175,16880633-16880779,
           16880832-16881036
          Length = 447

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 51  PKAVTTEPWDGKDG 92
           P  V +EPWDGKDG
Sbjct: 410 PTIVQSEPWDGKDG 423


>09_02_0625 +
           11334418-11334499,11335067-11335164,11335758-11335831,
           11335996-11336598,11336692-11337185,11338035-11338170,
           11338417-11338488,11338581-11338652,11339078-11339226,
           11340129-11340364,11340567-11340693,11341011-11341079,
           11341172-11341361,11341465-11341857,11342084-11342195
          Length = 968

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 416 NMTKFNLCKLESFIE*NLDCENPSGFIYRISKTDLSKV 529
           N T F++   E FI  ++DC  PSGF Y   KT+++ +
Sbjct: 89  NGTYFHISVDEDFI--SIDCGLPSGFSYVDEKTNITYI 124


>09_03_0001 -
           11373469-11373862,11374072-11374264,11374414-11374482,
           11374858-11374984,11375223-11375485,11375697-11375785,
           11375832-11375909,11376070-11376141,11376234-11376372,
           11378857-11379323,11380781-11381345,11382553-11382622
          Length = 841

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 467 LDCENPSGFIYRISKTDLSKVGLFSMYFNPVSL 565
           + C N SG I RI   DLS   LF +  N  +L
Sbjct: 399 IKCRNTSGNIMRIISIDLSNSNLFGVISNNFTL 431


>01_06_1632 + 38763721-38764033,38764196-38764641
          Length = 252

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 65  GHGF-GHLCSFTGAVCLQPGGS 3
           G+GF G +CSFTG  C  P  S
Sbjct: 51  GNGFNGFICSFTGVNCWNPSDS 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,244
Number of Sequences: 37544
Number of extensions: 196746
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)