BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B02
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404...    29   1.9  
07_03_0163 + 14588041-14588266,14588835-14589001,14589880-145900...    27   5.9  

>11_04_0467 +
           18039458-18039638,18040136-18040227,18040336-18040452,
           18041228-18041313,18041385-18041643,18041761-18041957,
           18042181-18042213,18043371-18043862,18044236-18044299,
           18045478-18045618,18045726-18045803,18047077-18047166,
           18047260-18047352,18047430-18047489,18047567-18047635,
           18047737-18047823,18048337-18048379,18048517-18048587,
           18049050-18049143,18050335-18050447,18050909-18050998,
           18051075-18051155,18052211-18052291,18052369-18052464,
           18052543-18052599,18052693-18052737,18052807-18052872,
           18052961-18052999
          Length = 1004

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 239 VFYKSILLLWQPPF 198
           +FY SILLLW+P F
Sbjct: 642 IFYNSILLLWEPQF 655


>07_03_0163 +
           14588041-14588266,14588835-14589001,14589880-14590068,
           14590193-14590315,14590531-14590793,14590882-14590976,
           14591529-14591965,14592461-14592481
          Length = 506

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 266 PHLDKEINFHSDQFRRREDAFNRH 337
           P +DKE+N      RRR +  N+H
Sbjct: 415 PKMDKEVNERGTSTRRRHNVTNKH 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,488,486
Number of Sequences: 37544
Number of extensions: 130167
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)