Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40115
(832 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 137 9e-33
SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_24491| Best HMM Match : Hormone_2 (HMM E-Value=6.4) 31 1.5
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 30 2.0
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 4.6
SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 28 8.1
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46) 28 8.1
SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 137 bits (332), Expect = 9e-33
Identities = 62/85 (72%), Positives = 74/85 (87%)
Frame = +3
Query: 255 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 434
L+NNP LEKLLPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NT
Sbjct: 51 LENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNT 110
Query: 435 GLGPEKTSFFQALSIPTKISKGTIE 509
GLGPEKTSFFQAL+IPTKI++GTIE
Sbjct: 111 GLGPEKTSFFQALAIPTKIARGTIE 135
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +2
Query: 107 QLLDEYPKCFIVGADNVGSQQ 169
Q LDEYPK F+VG DNVGS+Q
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQ 21
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/48 (47%), Positives = 26/48 (54%)
Frame = +1
Query: 112 LGRVPKMFHRGCR*RGLATDXADSISLRGSSIVLMGKNTMMRKAIKDH 255
L PK+F G G SLRG VLMGKNTM+RKAI+ H
Sbjct: 3 LDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGH 50
>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 32.7 bits (71), Expect = 0.38
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -1
Query: 790 VLETIGNGMRAEAISWVSNSQRKSSYISNSSLELGTEIFWFDVQNFR 650
+ +++ G+ + +SW+SN + + S++ G E F+ D+ + R
Sbjct: 547 IADSLPGGLSSRVLSWISNKVNVRKFFQHISVQFGREYFYSDLPSRR 593
>SB_24491| Best HMM Match : Hormone_2 (HMM E-Value=6.4)
Length = 178
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 229 MMRKAIKDHWTTIQPSRN--CCHTSRATLASCSPAETSLRSVTNCWR 363
+ RKAIK++W Q N T+RA L SC ET+L + WR
Sbjct: 9 LRRKAIKEYWKVSQDLNNNDIIQTTRAKLYSC---ETTLIRLFEDWR 52
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -3
Query: 473 KSLEERGLLWTEAGVVGGNDD*QWG 399
K+LEERGLL+ +GV GG + ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 427 WAGMTTDNGAMAPGRAGAWTLFSNSL 350
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 166 TDXADSISLRGSSIVLMGKNTMMRKAI 246
T AD I +RG I L+GKNT M+ +
Sbjct: 418 TVNADFIVIRGQGIPLLGKNTAMKLGV 444
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 184 ISLRGSSIVLMGKNTMMRKAIKDHWTTIQPSRNCCHTSRATLAS-CSPAETSLRSVTNCW 360
+S+R + + ++ ++ +I+P+R C HTS L++ S+R C
Sbjct: 45 VSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQ 104
Query: 361 RTKSKLQLVLVPL 399
T SK+ V L
Sbjct: 105 HTSSKVLSTYVQL 117
>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
Length = 320
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 548 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 715
+ S + + +L +SP YG+ + +G +F IL + PE + + A VA
Sbjct: 82 IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141
Query: 716 AALSLAI 736
A +LAI
Sbjct: 142 ALTTLAI 148
>SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 154 RGLATDXADSISLRGSSIVLMGKNTMMRKAI 246
RG D AD I++RG I L+GKNT + +
Sbjct: 502 RGNTVD-ADFITIRGKGIPLLGKNTAKKLGV 531
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,134,466
Number of Sequences: 59808
Number of extensions: 620047
Number of successful extensions: 1619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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