Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40109
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)        129   2e-30
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   54   2e-07
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score =  129 bits (312), Expect = 2e-30
 Identities = 58/96 (60%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
 Frame = +1

Query: 214 FHIYQRPK-KAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQML 390
           F I+ R   K  ++  STVLG +G   D LTLT+ + AR+QMYEH+H K+M+  A+AQML
Sbjct: 111 FQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHISARLQMYEHDHGKAMSCTAIAQML 170

Query: 391 STMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 498
           STMLYY+RFFPYY  N+LAGLDS+GKGCV+S+DP+G
Sbjct: 171 STMLYYRRFFPYYTYNILAGLDSEGKGCVFSFDPVG 206



 Score =  111 bits (266), Expect = 9e-25
 Identities = 50/79 (63%), Positives = 64/79 (81%)
 Frame = +3

Query: 516 FRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIYTGDSIY 695
           +RAGGSA+A LQPLLDNQIG KN + V   PL R+KA+AL+KDVF SAAERDIYTGD++ 
Sbjct: 213 YRAGGSASALLQPLLDNQIGFKNQEGVPHTPLTRDKAVALVKDVFTSAAERDIYTGDAVI 272

Query: 696 ILIITANGIQEEKFELRKD 752
           I ++++ G+ EE F LR+D
Sbjct: 273 INVVSSEGVSEEAFPLRRD 291



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 32/67 (47%), Positives = 44/67 (65%)
 Frame = +2

Query: 53  YKMLSVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRD 232
           Y +  +      Y     KQ  F PYA NGG+++AI+G+D+AVI +DTRLS GF I+TRD
Sbjct: 58  YSLTKMQVGSESYYGGNPKQTYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRD 117

Query: 233 QKKLFKL 253
             K++KL
Sbjct: 118 SPKVYKL 124


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
 Frame = +1

Query: 235 KKAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 414
           +K  Q+ E   +G  G   D  T++  L+ R+ +YE    + +       M+S +LY +R
Sbjct: 110 QKIFQMGEKLFVGLPGLATDVQTISSRLKFRLNLYELREGRPIKPKTFLSMVSNLLYERR 169

Query: 415 FFPYYVSNVLAGLD-SDGKGCVYSYDPIGHCAPITSALVV 531
           F PY+V  V+AGLD    +  + S D IG C   T   VV
Sbjct: 170 FGPYFVEPVIAGLDPKTNEPFISSMDLIG-CPMETKDFVV 208



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 137 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKL 253
           NG +I+A+ G +   I AD RL       + D +K+F++
Sbjct: 77  NGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQM 115


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +1

Query: 226 QRPKKAVQIIESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLY 405
           Q  KK ++I    +    G   D     RLL  + ++YE  + + ++  A +++L+ M+Y
Sbjct: 57  QTVKKVIEINPYLLGTMAGGAADCSFWERLLAKQCRIYELRNKERISVAAASKILANMVY 116

Query: 406 Y 408
           Y
Sbjct: 117 Y 117


>SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 398 IVESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPV 276
           +V +  A + +V+ LL SC  +C L+  R +KV   HQ+ +
Sbjct: 165 MVSTAKAYSVIVLFLLVSCFLLCFLSYFRLLKVTRRHQRQI 205


>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -1

Query: 636 EEQGPFP*AKELLLHSAYSLSQFDCRGAVAAVQQRNHQRGSYGRTVSDRVVTIYTSLT 463
           +E GP+P    LLL +AY L+Q D R  +A   Q   Q   +G      + T YT  T
Sbjct: 10  KEAGPYPMYVLLLLLAAYLLNQLD-RYILAVTSQPMAQSIKFGDKGCLALNTSYTKYT 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,707,032
Number of Sequences: 59808
Number of extensions: 557403
Number of successful extensions: 1331
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)