Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40099
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   2e-34
SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)        32   0.67 
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_59382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score =  142 bits (345), Expect = 2e-34
 Identities = 69/96 (71%), Positives = 81/96 (84%)
 Frame = +3

Query: 222 VRQICLPATRQLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFA 401
           VR +  P  + LYMLLITTK SNILEDLETLRLFSRV+PEYC  + E+E+   AF L+FA
Sbjct: 525 VRYVYQPLEK-LYMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFA 583

Query: 402 FDEIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVR 509
           FDEIVALGYRE+VNLAQ+R+F EMDSHEEK++QAVR
Sbjct: 584 FDEIVALGYRENVNLAQIRTFTEMDSHEEKVFQAVR 619



 Score =  105 bits (253), Expect = 3e-23
 Identities = 49/64 (76%), Positives = 59/64 (92%), Gaps = 3/64 (4%)
 Frame = +1

Query: 70  VLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGG---RQHTFVETESVRYVY 240
           VL+AA +CTK+GKA++SRQFVEMT++RIEGLL+AFPKLMT G   +QHTFVETESVRYVY
Sbjct: 470 VLLAAAICTKNGKAIISRQFVEMTRSRIEGLLSAFPKLMTSGSSVKQHTFVETESVRYVY 529

Query: 241 QPLD 252
           QPL+
Sbjct: 530 QPLE 533


>SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)
          Length = 402

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -2

Query: 839 FFPRGNXRGPLTLTLGCRNREHERSPVCAAAAELHGRTTQLYEYLWPVS 693
           F   GN   P+ L      RE +R  V  A+  LHGR+  LYE  +P+S
Sbjct: 84  FICSGNTM-PIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLS 131


>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 445 RLTLSLYPRATISSKANSKLKAWFKTSVSVSCTQYSGTTLLKSLNVSRSS 296
           +LTL+L     + S +N KL++  K SVS+S    S  +  K L V  SS
Sbjct: 605 KLTLNLEKTKCMLSGSNRKLESKIKLSVSISNYNVSNVSNFKYLGVFISS 654


>SB_59382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 228 QICLPATRQLYMLLITTKASNILEDLETLRLFSRVVP 338
           +IC  A +++  L++  +  NI ED  TLR     VP
Sbjct: 3   EICREAEQEILNLMVNQQEKNIAEDDATLRSLEAKVP 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,517,906
Number of Sequences: 59808
Number of extensions: 565817
Number of successful extensions: 3469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3468
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)