Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40096
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   9e-17
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_20571| Best HMM Match : RAMP (HMM E-Value=5.3)                      29   4.6  
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)                   28   8.0  

>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 84.6 bits (200), Expect = 9e-17
 Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
 Frame = +2

Query: 257 KPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT----VNYEDPNLNISYPILSI 424
           KPS   +     + RK+C+GD+   +E LSDQ  NF+      VNYEDPNLN+S P+ SI
Sbjct: 63  KPSRRTLHASMALFRKFCMGDRVCEVEFLSDQSINFANNRFPWVNYEDPNLNVSIPVFSI 122

Query: 425 HGNHDDPVGQGS 460
           HGNHDDP G+G+
Sbjct: 123 HGNHDDPAGKGA 134



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = +3

Query: 111 IASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQ 254
           +A+D+HLG+ E D VRG DSF+ FEE L +A + +VD ILLGGDL+ +
Sbjct: 14  MATDVHLGYAEKDQVRGNDSFVTFEETLQIAKKRNVDFILLGGDLYHE 61



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 27/67 (40%), Positives = 35/67 (52%)
 Frame = +1

Query: 559 KGLTRLALYGT*PFKRSETFTSFC*KKSGNGETR*NIGTGFHLFVLHPNHADRGHSNYIP 738
           KG T+LALYG    +      +F   K      + +  + F+ FVLH N A  GH+NYIP
Sbjct: 132 KGATKLALYGLGSVRDERLHRTFVNNKVKMLRPKEDPDSWFNAFVLHQNRAKHGHTNYIP 191

Query: 739 EGVLPTF 759
           E  L TF
Sbjct: 192 EKFLDTF 198


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 318  SPRQYLRIISVHLNIQLTEGLVDQTDHLLKVSNQHHIVPQETKLLQKL 175
            +P  Y      HL+I L E +V+   HL  +  QH + P+ +++LQ +
Sbjct: 1505 NPTVYKLAKDYHLDISLFERVVNNKMHLECLRKQHRMRPEISQMLQHI 1552


>SB_20571| Best HMM Match : RAMP (HMM E-Value=5.3)
          Length = 361

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 268 DRRFS*SNRSPPKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKP 131
           DRR + + RS P ++   SHC   D T   A K SS   G+   +P
Sbjct: 259 DRRGNEAIRSSPHALYPRSHCAVED-TVRSATKESSGNEGAILSRP 303


>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
          Length = 963

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 244 RSPPKSIKS-TSHCTARDKTSSKAIKLSSPRTGSFSMKPR 128
           RSPP  + S TSHC A  K   + ++  SP T   ++ P+
Sbjct: 233 RSPPSPLHSETSHC-ATSKGEVEPVQRCSPETAKTALGPK 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,626,199
Number of Sequences: 59808
Number of extensions: 542393
Number of successful extensions: 1116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)