Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40092
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)                   28   7.7  

>SB_18371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 327 TCNKNNEISRWTQKKIT 377
           TCN N+E+SRWT+   T
Sbjct: 127 TCNDNDEVSRWTKTIFT 143


>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
          Length = 1130

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 238 KNSNRSYEIGNRSLVEIAKQFNISKSV--LHRHVTRTMK 348
           +N  ++YEI +     I K FNISK+     RHV   +K
Sbjct: 437 RNGGKAYEISSLDSSHIIKGFNISKATPRTERHVEYLLK 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,158,958
Number of Sequences: 59808
Number of extensions: 416779
Number of successful extensions: 978
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)