Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40079
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 6e-11
SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11) 60 1e-09
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10) 36 0.030
SB_41032| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.090
SB_11068| Best HMM Match : bZIP_1 (HMM E-Value=9.2) 34 0.090
SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10) 32 0.37
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 31 0.64
SB_21326| Best HMM Match : Myosin_head (HMM E-Value=5e-05) 31 0.84
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09) 30 1.5
SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14) 30 1.5
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 29 4.5
SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_45952| Best HMM Match : LEA_5 (HMM E-Value=8.2) 28 5.9
SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_40002| Best HMM Match : AvrB_AvrC (HMM E-Value=2.5) 28 7.9
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 28 7.9
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/51 (58%), Positives = 40/51 (78%)
Frame = +3
Query: 336 VKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLER 488
++++ Q VP TPPL PID+D QE +K ERK+ RNR+AASKCR+RKLE+
Sbjct: 109 MEEQSQVVPH---TPPLPPIDLDLQEAVKNERKKLRNRLAASKCRKRKLEK 156
>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
Length = 382
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/53 (58%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = +3
Query: 339 KDEPQTVP---SAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLER 488
K E Q P S PL PID++ QE +K ERK+Q+NRVAASKCRR+KLER
Sbjct: 276 KYEEQAAPPHNSGLGGLPLPPIDLELQEIVKRERKKQKNRVAASKCRRKKLER 328
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/50 (58%), Positives = 36/50 (72%)
Frame = +3
Query: 339 KDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLER 488
K E QT S L PID++ QE +K ERK+QRNR+A+SKCR+RKLER
Sbjct: 452 KLESQTTESGV----LQPIDLEIQEVVKRERKKQRNRIASSKCRKRKLER 497
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 67 LSSPDLQMLKLGSPELEKLI--IQNGMVXXXXXXXXXXVLF--PAVAPTEEQEMYARPFV 234
L SPD +LKL SP++EK++ +Q+G+ P PT EQ Y+R F
Sbjct: 252 LRSPDFSLLKLASPDIEKMLMSLQSGISASPTPGSLFNSTAHGPVNPPTTEQ--YSRGFT 309
Query: 235 EALDKLH 255
EAL LH
Sbjct: 310 EALQDLH 316
>SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)
Length = 496
Score = 35.9 bits (79), Expect = 0.030
Identities = 13/27 (48%), Positives = 23/27 (85%)
Frame = +3
Query: 411 EKIKLERKRQRNRVAASKCRRRKLERI 491
E++K+ R+RQRN+ AAS+CR ++ +R+
Sbjct: 286 EELKIIRRRQRNKQAASRCREKRRQRL 312
>SB_41032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 34.3 bits (75), Expect = 0.090
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +3
Query: 396 DMDTQEKIKLERKRQRNRVAASKCRRRKLERI 491
++ +E+ + + +RQRN+VAASKCR ++ E +
Sbjct: 78 ELTPEEETRRKVRRQRNKVAASKCRLKRREHV 109
>SB_11068| Best HMM Match : bZIP_1 (HMM E-Value=9.2)
Length = 106
Score = 34.3 bits (75), Expect = 0.090
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +3
Query: 396 DMDTQEKIKLERKRQRNRVAASKCRRRKLERI 491
++ +E+ + + +RQRN+VAASKCR ++ E +
Sbjct: 70 ELTPEEETRRKVRRQRNKVAASKCRLKRREHV 101
>SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/42 (40%), Positives = 30/42 (71%)
Frame = +3
Query: 366 AASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLERI 491
A ST ++P + +E+ KL +R+RN+VAASKCR+++ + +
Sbjct: 87 AESTEMVTP---EEEERRKL--RRERNKVAASKCRQKRKQHV 123
>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
Length = 508
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +3
Query: 309 PLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKLER 488
P E P + DEP V SA + PL+PI+ ++K+ ++ N KCR E
Sbjct: 6 PREDVPRHKMADEPAQVASAENKLPLTPIENARRQKVCRFYAKKGNCRFGEKCRFVHKEI 65
Query: 489 IS 494
IS
Sbjct: 66 IS 67
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 31.9 bits (69), Expect = 0.48
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +3
Query: 207 TRNVCA-TFRRSARQAAHGEAVTP-LGRRVYADLDRPLERYPTPIVKDEPQTVPSAASTP 380
T+ + A T + +A A+H TP LG+ V R ER TP+ + E + A +P
Sbjct: 102 TKTISAVTSQTTASMASHK---TPQLGQNVTPLRGR--ERISTPVDEGEHVLLSPMAQSP 156
Query: 381 PLSPIDMDTQEKIKL----ERKRQRNR 449
SP+ M T E K ER+R R R
Sbjct: 157 AFSPVPMTTSEGAKYACPSERERDRKR 183
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +2
Query: 374 HAAAITHRHGHSGKDQTGEKETEESGSRFQM*TT*AGTYFKAGREVKILKGENAELAQMV 553
H TH HGH+ +GE+++ +R TT F R V + G N + ++
Sbjct: 38 HTQDHTHGHGHAHPQNSGERKSYSQAARGHQNTTEVPQDFTTAR-VDLPAGANISVPDVL 96
Query: 554 VKLRGHVHRLKGA 592
L+ H+L GA
Sbjct: 97 RALKDK-HQLVGA 108
>SB_21326| Best HMM Match : Myosin_head (HMM E-Value=5e-05)
Length = 469
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +3
Query: 180 ISRSSTYGGTRNVCATFRRSA-RQAAHGEAVTPLGRRVYADLDRPLERYPTPIVKDEPQT 356
+S S Y G T R R E V + RR+ + +R +P++ P
Sbjct: 11 VSGVSLYRGLTTKTKTLRGQVLRSLCDPEMVAAIARRINS-----FKRQSSPVINGSPHG 65
Query: 357 VPSAASTPPLSPIDMDTQEKIKL 425
+ TPPLSP +D ++ L
Sbjct: 66 SFESLRTPPLSPEVLDVTARVGL 88
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 24 CWAGWETFTNRCTRSLLARFTNVEARIS*VGKIDHSERYG-DNRYPYS 164
C W+T+TN C A N + +G+ D RY + PYS
Sbjct: 1802 CGTNWKTYTNECMMRKQACMNNSMVTVRSIGRCDPCVRYDCGSTNPYS 1849
>SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)
Length = 275
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 396 DMDTQEKIKLERKRQRNRVAASKCRRRKLERI 491
++ E K +R+RN++AA KCR+R+ E I
Sbjct: 167 ELSPAELEKRRIRRERNKLAAFKCRQRRKEHI 198
>SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)
Length = 812
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 500 GREVKILKGENAELAQMVVKLRGHVHRLKGAGPSL 604
G E KIL+ EN L Q + + H+ + K GP +
Sbjct: 15 GEEFKILQAENKHLEQQLEEKTSHIGQCKRKGPQM 49
>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 339 KDEPQTVPSAASTPPL---SPIDMDTQEKIKLERKRQRNRVAASKCRR-RKLER 488
+DE + +PS A+ PPL P TQ ++ E ++R + K +R R+L+R
Sbjct: 948 EDEYEILPSEAAAPPLPDTRPGASPTQSEVDAEESKKREKKDKEKEKRERELQR 1001
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 287 STSERRHCLAVCSLSSASTKGRAYISCSSVGAT 189
STS+R L+ S S+AS A+ +CSS G+T
Sbjct: 235 STSKRTKSLSSASSSAASLATTAFSTCSSSGST 267
>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
Length = 575
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 324 PTPIVKDEPQTVPSAASTPPLSPIDMDTQEK-IKLERKRQR 443
PT + EP T P+ L P D T E+ + +E K+++
Sbjct: 36 PTTVPTTEPTTAPTTPEPTTLEPTDPPTTERPLTMEEKKEQ 76
>SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 378 PPLSPIDMDTQEKI--KLERKRQRNRVAASKCRRRKLERI 491
P ++P + E+ K E + +NR AA +CRR+K E +
Sbjct: 225 PGIAPSNQQIAEEATRKREMRLMKNREAAKECRRKKKEYV 264
>SB_45952| Best HMM Match : LEA_5 (HMM E-Value=8.2)
Length = 246
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 326 HSHREGRAPDGAERGQHAAAITHRHGHSGKDQ 421
H R+ + + +R +H A HRHG +D+
Sbjct: 145 HPERKHNSTESVQRDEHHAEDRHRHGEPKRDE 176
>SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/65 (30%), Positives = 26/65 (40%)
Frame = +3
Query: 177 LISRSSTYGGTRNVCATFRRSARQAAHGEAVTPLGRRVYADLDRPLERYPTPIVKDEPQT 356
L+S Y R A F R+ A A PL D+ P R +KD P
Sbjct: 296 LVSLIGLYTRRREQAAAFTRTP--AVKQRATDPLATEGTDDVSPPTLRVYAQQIKDRPLA 353
Query: 357 VPSAA 371
VP+A+
Sbjct: 354 VPAAS 358
>SB_40002| Best HMM Match : AvrB_AvrC (HMM E-Value=2.5)
Length = 633
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 309 PLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLER 431
PL+ PTP ++ P +P A T + + + + I ER
Sbjct: 157 PLKETPTPALESAPAAMPDATDTASCAKLGIQKRNAIGHER 197
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 336 VKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRR-RKLERI 491
++ + + + +++ S D++ ++K+KLE R+RN +A K RK+E+I
Sbjct: 1084 LEKQAKALNDGSNSTKTSSQDLE-KKKMKLEEDRKRNEIAKQKLASIRKIEKI 1135
>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 336 VKDEPQTVPSAASTPPLSPIDMDTQEKIKLER 431
VK + ++ +TPP SP +D +IK+ER
Sbjct: 821 VKQDIRSRSRGENTPPKSPTRLDLSPRIKIER 852
>SB_27| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 391 PSTWTLRKRSNWRERDRGIG*P--LPNVDDVSW 483
P TW LR+R + R+R R + P L D + W
Sbjct: 35 PPTWHLRRRQSLRKRKRAMNVPEVLSPTDSMPW 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,031,038
Number of Sequences: 59808
Number of extensions: 402514
Number of successful extensions: 1512
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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