Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30109
(801 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16867| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 5e-21
SB_24119| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6) 34 0.12
SB_49625| Best HMM Match : DPPIV_N (HMM E-Value=6.1) 31 0.82
SB_55475| Best HMM Match : VQ (HMM E-Value=2) 31 1.1
SB_43075| Best HMM Match : FA_desaturase (HMM E-Value=5.5) 31 1.1
SB_53530| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_9440| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_24509| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_16867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 98.7 bits (235), Expect = 5e-21
Identities = 41/51 (80%), Positives = 49/51 (96%)
Frame = +1
Query: 55 IWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGIEPSPDKMLQ 207
IWPHAE+PLIPVGK+VL+RNPKNYFAE+EQ AF+P+++VPGIE SPDKMLQ
Sbjct: 1 IWPHAEFPLIPVGKMVLNRNPKNYFAEIEQSAFNPASMVPGIEASPDKMLQ 51
>SB_24119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = +2
Query: 479 PSDSTV*TSF----DDAAKQRAIANIVDHLKDAAAFIQERAIKIFSQVHPELGNKVAAGL 646
PS TV T + +D + R + NI H+KDA FIQ+R ++ F++VHP+ GN +A L
Sbjct: 23 PSQFTVTTFWTKVLNDEERMRLVKNIAGHVKDAKDFIQKRCVQQFTKVHPDFGNGIAREL 82
Query: 647 APYK 658
++
Sbjct: 83 QKHQ 86
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 351 PNYFPNSFSGPQE 389
PNYFPNSFSGP +
Sbjct: 4 PNYFPNSFSGPMD 16
>SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6)
Length = 220
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTT 309
+AY THRH L T L I+HT +PTT
Sbjct: 15 YAYPSTHRHYLSKKTQASLIILHTGYAYPTT 45
>SB_49625| Best HMM Match : DPPIV_N (HMM E-Value=6.1)
Length = 708
Score = 31.5 bits (68), Expect = 0.82
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY THR RL T L VHT +P T + L +T T
Sbjct: 80 YAYPRTHRLRLSKNTQATLIQVHTGYAYPRTHRLHLSKYTQAT 122
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY THR L T L VHT +P+T + L +T T
Sbjct: 255 YAYPSTHRLHLSKNTQTSLIQVHTGYAYPSTHRLHLSKYTQDT 297
>SB_55475| Best HMM Match : VQ (HMM E-Value=2)
Length = 489
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY THR L T L VHT +P+T + L +T T
Sbjct: 338 YAYPSTHRLHLSKNTQTSLIQVHTGYAYPSTHRLHLSKYTQAT 380
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY THR RL T L VHT +P+T + L T T
Sbjct: 13 YAYPRTHRIRLSKNTQASLIQVHTGFTYPSTHRLHLSKNTQAT 55
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFT 336
+AY THR RL T L VHT +P T + L +T
Sbjct: 113 YAYPSTHRLRLSKYTQASLIQVHTGYAYPRTHRIRLSKYT 152
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY T RH L T L VHT +P+ + L +T T
Sbjct: 188 YAYPSTQRHHLSKNTQASLIQVHTGYAYPSLQRLHLSKYTQAT 230
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTT 309
F Y THR RL T L VHT +P+T
Sbjct: 163 FTYPSTHRLRLSKNTQASLIQVHTGYAYPST 193
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFT 336
+AY THR RL T L HT +P+T + L +T
Sbjct: 88 YAYPRTHRLRLSKNTQATLIQEHTGYAYPSTHRLRLSKYT 127
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY +HR RL T L VHT +P T + L +T T
Sbjct: 238 YAYPRSHRLRLSKYTQATLIQVHTGYAYPRTHRLRLSKYTQAT 280
>SB_43075| Best HMM Match : FA_desaturase (HMM E-Value=5.5)
Length = 292
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDL-KLFTIKTTALT 357
+AY THR RL T L VHT +P T + L KL K T T
Sbjct: 180 YAYPRTHRLRLSKNTQATLIQVHTGYAYPRTHRLRLSKLHLSKNTQAT 227
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY THR RL T L HT ++P+T + L +T T
Sbjct: 130 YAYPRTHRLRLSKNTQATLIQEHTGYVYPSTHRLRLSKYTQAT 172
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFT 336
+AY THR RL +T L HT +P+T + L +T
Sbjct: 235 YAYPSTHRLRLSNSTQATLIQEHTGFTYPSTHRLRLSNYT 274
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFT 336
+AY THR RL T L HT ++P T + L +T
Sbjct: 30 YAYPRTHRLRLSKYTQATLIQEHTGFIYPRTHRLRLSKYT 69
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY +HR RL T L VHT +P T + L +T T
Sbjct: 5 YAYPRSHRLRLSKYTQATLIQVHTGYAYPRTHRLRLSKYTQAT 47
>SB_53530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDL 324
+AY THR RL T L VHT +P+T + L
Sbjct: 230 YAYPSTHRLRLSKNTQATLIQVHTGFAYPSTHRLHL 265
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY THR RL T L VHT +P T + L T T
Sbjct: 105 YAYPRTHRLRLSKNTQATLIQVHTGYAYPRTHRLRLSKNTQAT 147
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 217 FAYSDTHRHRLGATTSKFL*IVHTKLLFPTTSVMDLKLFTIKT 345
+AY THR L T L HT +P T + L +T T
Sbjct: 5 YAYPSTHRLHLSKNTQATLIHEHTGFTYPRTHRLHLSKYTQAT 47
>SB_9440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 179 LSHLQTKCYKEDCLPIAIHIAIDLVQLP 262
+SH+ C KEDC P + D +Q+P
Sbjct: 16 VSHVDPVCRKEDCYPFDYVVEFDQIQIP 43
>SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 338 IVNSLRSITLVVGNSNFVWTIYRNLEVVAPS 246
I+N+L S+T +GNS V+TIY + +P+
Sbjct: 249 ILNALLSVTASIGNSIVVYTIYTTPRLYSPA 279
>SB_24509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -2
Query: 542 YWQ*LVV*LHHQNLFIQCCRLGEVVLSLATIIPVYISADIVSRLQTLSTWTFLWSRKRVG 363
YW +V + L I +L + L +++PV+ A+ + + T WS K+V
Sbjct: 107 YWA--IVHPMKRQLSITQSKLVIAFIWLGSVVPVFPYANSLKFTRETHTCEEYWSSKKVR 164
Query: 362 EIVRAVVLI 336
EI AV+ +
Sbjct: 165 EIFTAVIFV 173
>SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -2
Query: 335 VNSLRSITLVVGNSNFVWTIYRNLEVVAPS 246
+ SLRS LV NS+F YRN VVAP+
Sbjct: 59 IQSLRSSLLV--NSSFAKNSYRNFAVVAPA 86
>SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 52 KIWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPS 162
K WP + YPL V + D K YF +Q P+
Sbjct: 215 KQWPSSSYPLQKVSSDLFDYKGKKYFLVADQYRGLPN 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,691,761
Number of Sequences: 59808
Number of extensions: 525031
Number of successful extensions: 1464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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