Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30107
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)              96   1e-20
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                29   2.2  
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   3.9  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 43/51 (84%), Positives = 47/51 (92%)
 Frame = -2

Query: 252 AAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 100
           AAVRDI DASVY ++ LPKLY KLHYCVSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 48  AAVRDIADASVYEVYALPKLYVKLHYCVSCAIHSKVVRNRSKEDRKIRTPP 98



 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 41/46 (89%), Positives = 44/46 (95%)
 Frame = -3

Query: 392 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVE 255
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVE
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVE 46


>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 428 RRSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARC 306
           RR+LFTG E     RK RN  + KH R   K  R  + A C
Sbjct: 683 RRNLFTGEEDLGEGRK-RNTKKDKHSRDKSKFSRRHSVAAC 722


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -2

Query: 258 RTAAVRD--INDASVYPMFQLPKLYAKLHYC--VS--CAIHSKVVRNRSKKDRRIR 109
           R AAVRD  + D ++Y      +       C  VS  C IH +VVR+   +DR IR
Sbjct: 683 RAAAVRDCIMRDRAIYNCVMSDRFIRDCVMCDRVSRDCLIHDRVVRDCVMRDRVIR 738


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,323,314
Number of Sequences: 59808
Number of extensions: 224480
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)