Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30106
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)                   64   1e-10
SB_24839| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            33   0.33 
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               31   0.77 
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           31   1.4  
SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079)                    31   1.4  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               30   2.4  
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)                      29   4.1  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      29   4.1  
SB_25179| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 29   5.5  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               28   7.2  
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)                 28   7.2  
SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     28   9.5  
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   9.5  

>SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)
          Length = 617

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/39 (64%), Positives = 35/39 (89%)
 Frame = +2

Query: 86  NKETLVISGGDGYEDFRSSTMTEDAGREDSTNHLLLWRV 202
           ++  L+ISGGDGYEDF++S+ +E AGR+DSTNHLL+W+V
Sbjct: 579 SRHILIISGGDGYEDFKTSSTSESAGRDDSTNHLLVWQV 617


>SB_24839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/39 (64%), Positives = 35/39 (89%)
 Frame = +2

Query: 86  NKETLVISGGDGYEDFRSSTMTEDAGREDSTNHLLLWRV 202
           ++  L+ISGGDGYEDF++S+ +E AGR+DSTNHLL+W+V
Sbjct: 115 SRHILIISGGDGYEDFKTSSTSESAGRDDSTNHLLVWQV 153


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/80 (26%), Positives = 31/80 (38%)
 Frame = +3

Query: 45  TQRSSRNKPKPVKPTKRPSLSPEGTATKTSGVRR*PRTQGERTPPTISFSGGSERISRPT 224
           T+ ++   P    PTK  + +P GT T T      P      T PT +    +   ++PT
Sbjct: 104 TKPTTTTPPATTTPTKPTTTTPPGTTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKPT 163

Query: 225 GFCNDATQRNLRDLTVECPA 284
                AT    +  T   PA
Sbjct: 164 TTTPPATTTPTKSTTTTPPA 183


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 36/122 (29%), Positives = 49/122 (40%)
 Frame = -3

Query: 739 AAASKTRVKSATALIPARSCRPNGKQSTSPKTRHYGSSRSINGAFRYHKHWSPSSPNPSL 560
           AAAS     S+ A +P+         S SP +  Y  S   +G       +SP+SP+ S 
Sbjct: 406 AAASPGYSPSSPAFMPSSPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYS- 464

Query: 559 ATKGSTSKLTHRHSPLSSRRIFSVGRVSDPVVDSPKHYSC*GQCLQHSGLSPVSSPTS*G 380
            T  S S  +  +SP S     S    S     +   YS       +S  SP  SPTS  
Sbjct: 465 PTSPSYSPTSPSYSPTSP----SYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPS 518

Query: 379 YA 374
           Y+
Sbjct: 519 YS 520


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 20  KALSRRSANAEKLQKQAETSQTNKETLVISGGDGYEDFRSSTMTEDAGREDS 175
           K   ++   A+K +KQ +  +  K+  V S  +   DF +S+ +E++  ED+
Sbjct: 92  KEKKKKKLEAKKKRKQKKKQKGKKKKRVSSSSESESDFITSSSSEESSEEDT 143


>SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079)
          Length = 605

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +3

Query: 60  RNKPKPVKPTKRPSLSPEGTATKTSGVRR*PRTQGERT-PPTISFSGGSERISRPTGFCN 236
           ++  KP   TKR S S E  +T   G       Q   T   + S  G S     PT  C 
Sbjct: 410 KSSKKPTTSTKRQSTSTETQSTSAEGQSTSTYGQSTSTEEQSTSVEGQSTSTKSPT--CK 467

Query: 237 DATQRNLRDLTVE 275
           D+ + N +D  VE
Sbjct: 468 DSPKANKKDNEVE 480


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 706 TALIPARSCRPNGKQSTSPKTRHYG-SSRSINGAFRYHKHWSPSSPNPSLATKGSTSK 536
           T +IP    + NG  +T+ K    G S++ +  +    K+ + S  +P L++KGSTSK
Sbjct: 808 TKVIPKEK-KKNGNGTTTMKEASEGVSNKHVPHSIEPTKNINTSKNDPDLSSKGSTSK 864


>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 601 YHKHWSPSSPNPSLATKGSTSKLTHRHSP-LSSRRIFSV 488
           +H+H SPSSP+PS     +     H H P LSS   F++
Sbjct: 605 HHRH-SPSSPSPSCIAIITVIHYRHNHHPALSSSPSFTI 642


>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
          Length = 230

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +3

Query: 69  PKPVKPTKRPSLSPEGTATKT 131
           P    PTKRPS SP GT T T
Sbjct: 134 PTTPTPTKRPSPSPTGTGTPT 154


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 744 RAPPRPKHASKVQQR*FLPDPVDRMVNSRRRPKHVITDPPD 622
           R  PR   A K ++  F+  PV+   N+ + P  V+T  PD
Sbjct: 474 RRAPRSPRARKNRKDDFVSSPVESKTNNLKSPNIVVTAGPD 514


>SB_25179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 565 SLATKGSTSKLTHRHSPLSSRRIFSVGRVSDPVVDSPKHYSC*GQCLQHS 416
           SLA++     +T+ H    +  +   GR S  V+D P H      C  HS
Sbjct: 112 SLASRRDARAITNTHQSRKATLLGYRGRWSSSVIDRPLHTQAGASCRVHS 161


>SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 565 SLATKGSTSKLTHRHSPLSSRRIFSVGRVSDPVVDSPKHYSC*GQCLQHS 416
           SLA++     +T+ H    +  +   GR S  V+D P H      C  HS
Sbjct: 199 SLASRRDARAITNTHQSRKATLLGYRGRWSSSVIDRPLHTQAGASCRVHS 248


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 586 SPSSPNPSLA-TKGSTSKLTHRHSPLSSRR 500
           SP   N +LA TKG TS+   RH P  +RR
Sbjct: 9   SPQGTNHNLARTKGQTSEGNRRHHPRHTRR 38


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 706 TALIPARSCRPNGKQSTSPKTRHYGSSRSINGAFRYHKHWSPSSPNPSLATKGSTS 539
           T  + A   RP G    S K+   GS  S +      KH SPS  +  + TKG+T+
Sbjct: 469 TPTLSAPPPRPQGNLLESLKSSE-GSMESTSNDSPLRKHSSPSLSDAIMRTKGTTN 523


>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
          Length = 566

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 18  RKR*ADARLTQRSSRNKPKPVKPTKRPSLSPE 113
           RKR   AR +Q S +NKP   KP+K  +  P+
Sbjct: 138 RKR--QARTSQASRKNKPSKNKPSKNKTTKPQ 167


>SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 617 NGSGGSVMTCFGRRRLFTIRSTGSGRNQRCCTFDA 721
           +  GG++      RRL  + STGS R+  C + DA
Sbjct: 545 HAGGGAIKAKRNTRRLSPVPSTGSRRSSSCSSSDA 579


>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
 Frame = -3

Query: 655  SPKTRHYGSSRSINGAFRYHKHWSPSSPNPSLATKGSTSKLTHRHSPLSSRRIFSVGRVS 476
            SPK     SS   N       H+    P P    K ++S        L S    S+G   
Sbjct: 848  SPKASKAKSSVRTNNNVSRELHYEGQDPKPYTPVKSASSAFLLEARGLESASTSSMGSFC 907

Query: 475  DPVVDSP---KHYSC*GQCLQHSG--LSPVSSPTS 386
            D    SP   +  S  G   QHSG  LSPV   ++
Sbjct: 908  DHEPLSPRAQRQPSDSGCSSQHSGIELSPVEQKSN 942


>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 17  TKALSRRSANAEKLQKQAETSQTNKETLVISG-GDGYEDFRSSTMTEDAGREDSTNH 184
           TKAL RR+   EKL+++ E  Q      ++ G  +      +  + +D GR+ +  H
Sbjct: 214 TKALMRRARALEKLERKQECLQDLTAVCILEGFSNPSWMMHADRVLKDIGRQKAKEH 270


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 30  ADARLTQRSSRNKPKPVKPTKRPSLSPEGTATKTSGVRR*PRTQGER 170
           ADA +   +       VKP K P   P+G   KT      P T+  +
Sbjct: 704 ADAHVQAYAPAKSDSAVKPDKSPQQQPQGAQQKTENNVNSPNTKATK 750


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,866,281
Number of Sequences: 59808
Number of extensions: 443296
Number of successful extensions: 1510
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)