Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30102
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   6.8  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   9.0  

>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +1

Query: 256 IWN*NAFKFLINLGTRARTDLSNMKFLVLALCVCAVSAQ 372
           ++N + FKF++NL T  R+ +SN K ++ A+C   +S Q
Sbjct: 463 VYNTDYFKFILNLATCNRSFVSN-KQVLFAVCSLQLSIQ 500


>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 14  CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 133
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 26  WHWGSVDSISGSRARFQLSGNSGRKHSR 109
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,969,632
Number of Sequences: 59808
Number of extensions: 427568
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)