Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30096
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               32   0.63 
SB_6759| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)                  30   1.9  
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)                   29   4.4  

>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = +3

Query: 315  GSDAYGKRRKREVTDESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGTGAEG 494
            G        KRE + ++   T P+         E+N+++T  R  PSQ     + T A+ 
Sbjct: 798  GGSTQSHAHKRESSPKALLPTPPLSHALSPYVKETNRMITPTRHAPSQ-----NKTAAQS 852

Query: 495  ASQSREKCACQQPDSRSH 548
            +      C   Q +S SH
Sbjct: 853  SGSPGYPCGIPQNESTSH 870



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 342 KREVTDESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGTGAEGASQSREKCA 521
           KRE + ++   T P+     +   E+NQ++T  R   SQ    ++      +S   ++C 
Sbjct: 732 KREYSPKALLPTPPLSHALSQYVKETNQMITPTRHVSSQ---SKEMPAQTSSSPGNDRCG 788

Query: 522 CQQPDSRSH 548
             Q +S  H
Sbjct: 789 IPQNESTYH 797


>SB_6759| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)
          Length = 304

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 489 LHQYHHAAEPLVTVRVAASLVFGSIRRSPPLE-VDLPASSKRCFRRSLLVFFVYRMRPNR 313
           LH  ++    +  V++A  L +  +R SPPL  + LP      + R  L  F YR+ P +
Sbjct: 138 LHMRYNTLVTMKRVKLALGLCWADLRESPPLSLLRLPPLPIPWYARYELEGFPYRISPQK 197


>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 1693

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +3

Query: 303  VNCRGSDAYGKRRKREVTDESTALTMPVGQLREE-VTVESNQILTTQRREP-SQVARQRD 476
            VN  G+ +   R + EV    + L  P     E  +T  +NQ++ +Q  EP    + Q  
Sbjct: 1151 VNTAGTASADTRCQHEVAVADSPLVCPQTHTGEPAITTLNNQVVASQMEEPQGSTSAQPA 1210

Query: 477  GT---GAEGASQSREKCA 521
            GT    AE A +  +K A
Sbjct: 1211 GTANGSAEAADEHHQKTA 1228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,465,339
Number of Sequences: 59808
Number of extensions: 453493
Number of successful extensions: 2441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2439
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)