Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30094
         (288 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   6e-04
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.5  
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)            26   4.4  
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)                    26   4.4  
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          26   5.8  

>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKV 125
           C   I K EG  +  KGA +N+LRG  GA VL  +D+ K++
Sbjct: 255 CTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGFDKFKEL 295


>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLRGT-GGAFVLVLYDEIKKVL 128
           IA+TEG  + FKG   N+L  T   A     Y ++K+ L
Sbjct: 796 IARTEGARSLFKGLCPNLLAVTPSRAIYFTTYQKLKEWL 834


>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
          Length = 321

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 100 TSTKAPPVPLRTLEKAPLK 44
           TST++ P P +TLEKA +K
Sbjct: 27  TSTQSHPEPYKTLEKATVK 45


>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 276

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 12  TIAKTEGTSAFFKGAFSNVLRGTGGAFVLV-LYDEIK 119
           T+ KTEG    +KG    + R    A + + LYD++K
Sbjct: 75  TLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVK 111


>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 94  TKAPPVPLRTLEKAPLKKAEVPSVLAMVAQ 5
           ++APP+P+R   + P  K   PS++  +++
Sbjct: 440 SEAPPIPVRKTSEIPQTKTHGPSLVKELSE 469


>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKK 122
           I K EG   +FKG  +NV+R     A     Y+E KK
Sbjct: 81  IGKEEGILGYFKGNGTNVIRIFPYSAVQFAAYEEYKK 117


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = +3

Query: 162 YVIPCRSHSPQIM 200
           +VIPCRS++P++M
Sbjct: 267 FVIPCRSNAPKVM 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,193,674
Number of Sequences: 59808
Number of extensions: 85902
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 315872425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)