Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30090
         (820 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42630| Best HMM Match : Ets (HMM E-Value=0)                         79   3e-15
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   3e-15
SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          79   6e-15
SB_13976| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_28841| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   9e-14
SB_7150| Best HMM Match : Ets (HMM E-Value=2e-38)                      75   9e-14
SB_40652| Best HMM Match : Ets (HMM E-Value=0)                         69   5e-12
SB_46246| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   6e-11
SB_34495| Best HMM Match : Ets (HMM E-Value=0)                         63   3e-10
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       56   5e-08
SB_31522| Best HMM Match : Ets (HMM E-Value=3.3e-25)                   54   1e-07
SB_19675| Best HMM Match : Ets (HMM E-Value=1.2e-25)                   53   2e-07
SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  

>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
          Length = 631

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 34/64 (53%), Positives = 48/64 (75%)
 Frame = +1

Query: 61  LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
           LW+FL++LL +  +    YI W +R+ GVF++V+   +AKLWG +KN  +MNY+KMSRAL
Sbjct: 537 LWEFLKELLENE-ETCPRYITWISREEGVFRLVNSGAVAKLWGQRKNRRNMNYEKMSRAL 595

Query: 241 RYYY 252
           RYYY
Sbjct: 596 RYYY 599


>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 977

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 34/64 (53%), Positives = 48/64 (75%)
 Frame = +1

Query: 61   LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
            LW+FL++LL +  +    YI W +R+ GVF++V+   +AKLWG +KN  +MNY+KMSRAL
Sbjct: 883  LWEFLKELLENE-ETCPRYITWISREEGVFRLVNSGAVAKLWGQRKNRRNMNYEKMSRAL 941

Query: 241  RYYY 252
            RYYY
Sbjct: 942  RYYY 945


>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 38/75 (50%), Positives = 51/75 (68%)
 Frame = +1

Query: 28  DMPESNTNGRLLWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHL 207
           D P + +    LW FL +LL+DP  +  N IAW+  + G FK+VDP  +A+ WG +KN  
Sbjct: 348 DTPATGSGQIQLWQFLLELLSDP--KNANCIAWEGTN-GEFKLVDPDEVARRWGERKNKP 404

Query: 208 SMNYDKMSRALRYYY 252
           +MNYDK+SRALRYYY
Sbjct: 405 NMNYDKLSRALRYYY 419


>SB_13976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 763

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 31/64 (48%), Positives = 46/64 (71%)
 Frame = +1

Query: 61  LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
           LW+FL++LL++       +I W +RD G+F++VD   +A+LWG +KN   M Y+KMSRA+
Sbjct: 534 LWEFLEELLDNKAYS-PKFITWVSRDDGMFRLVDSKAVARLWGQRKNRHDMTYEKMSRAI 592

Query: 241 RYYY 252
           RYYY
Sbjct: 593 RYYY 596


>SB_28841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 34/78 (43%), Positives = 50/78 (64%)
 Frame = +1

Query: 19  FPNDMPESNTNGRLLWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQK 198
           +P++          LW FL  LL++P    +++IAW  R    FK++DP  +A+ WG+QK
Sbjct: 233 YPDNRTFQRRGSLQLWQFLVALLDEP--ECSSFIAWTGRGLE-FKLIDPEEVARRWGLQK 289

Query: 199 NHLSMNYDKMSRALRYYY 252
           N  +MNYDK+SR+LRYYY
Sbjct: 290 NRPAMNYDKLSRSLRYYY 307


>SB_7150| Best HMM Match : Ets (HMM E-Value=2e-38)
          Length = 188

 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 32/65 (49%), Positives = 47/65 (72%)
 Frame = +1

Query: 61  LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
           LW+FL +LL D  +RY++ IAW  ++ G FK+ +   +AK WGI K+   MNY+K+SRA+
Sbjct: 31  LWEFLLELLAD--ERYSSLIAWSRKEYGEFKLKNQEEVAKRWGILKHRAGMNYEKLSRAI 88

Query: 241 RYYYR 255
           RYYY+
Sbjct: 89  RYYYQ 93


>SB_40652| Best HMM Match : Ets (HMM E-Value=0)
          Length = 120

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
 Frame = +1

Query: 49  NGRL-LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDK 225
           NG++ LW FL +LL D T R+   I W   + G FK+ DP  +A+ WG +KN  +MNY+K
Sbjct: 3   NGQIQLWQFLLELLTDKTCRHL--IMWVGEE-GEFKLNDPEQVAQQWGKRKNKPAMNYEK 59

Query: 226 MSRALRYYY 252
           +SRALRYYY
Sbjct: 60  LSRALRYYY 68


>SB_46246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 30/61 (49%), Positives = 43/61 (70%)
 Frame = +1

Query: 61  LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRAL 240
           LW+FL  LL D   RY++ I+W NR++G FK+++   +A+ WG  K+   MNYDK+SRAL
Sbjct: 15  LWEFLLDLLADG--RYSSIISWTNRESGEFKLLNQEEVARRWGHLKHRPGMNYDKLSRAL 72

Query: 241 R 243
           R
Sbjct: 73  R 73


>SB_34495| Best HMM Match : Ets (HMM E-Value=0)
          Length = 476

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
 Frame = +1

Query: 22  PNDMPESNTNGRL-LWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQK 198
           P    + N NG + LW FL +LL  P  +    I W   +   FK+++P  +A +WG +K
Sbjct: 224 PKKPAKYNGNGPIQLWQFLLELLLCPQSQ--RLIEWTYDEKFEFKLLNPPVIATMWGKRK 281

Query: 199 NHLSMNYDKMSRALRYYY 252
           N  +MNY+K+SR LRYYY
Sbjct: 282 NKPNMNYEKLSRGLRYYY 299


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = +1

Query: 1   AQHREFFPNDMPESNTNG-RLLWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLA 177
           A +++   N     + +G + LW+FL  L+ D  ++Y  YIAW+N   G+F++VD  G+A
Sbjct: 31  ADYKDTDKNSCNAGSIDGCQYLWEFLHYLVTD--KKYEKYIAWQNPQKGIFRMVDHNGVA 88

Query: 178 KLWGIQK 198
           KLWG  K
Sbjct: 89  KLWGKHK 95


>SB_31522| Best HMM Match : Ets (HMM E-Value=3.3e-25)
          Length = 79

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 25/72 (34%), Positives = 43/72 (59%)
 Frame = +1

Query: 70  FLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRALRYY 249
           FL +LL+ P +RY++ I W + + G+FK ++   +A+ WG ++N   M Y+  +R+LR Y
Sbjct: 1   FLIELLSKP-ERYSHLIEWVDEEKGIFKFINSTKVAREWGERRNKPFMKYENFARSLRTY 59

Query: 250 YRLIFCAKSRAK 285
                  K R+K
Sbjct: 60  IAKGILTKPRSK 71


>SB_19675| Best HMM Match : Ets (HMM E-Value=1.2e-25)
          Length = 139

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 28/72 (38%), Positives = 36/72 (50%)
 Frame = +1

Query: 37  ESNTNGRLLWDFLQQLLNDPTQRYTNYIAWKNRDTGVFKIVDPAGLAKLWGIQKNHLSMN 216
           E    G  L  FL  LL+ P    +  I+W N   G FK++ P  +A+ WG Q     M 
Sbjct: 31  EDQNKGYRLCQFLLDLLSSPEN--SQIISWTNGQPGEFKLLGPEAVARKWGDQTGKQKMT 88

Query: 217 YDKMSRALRYYY 252
           Y  MSRALR+ Y
Sbjct: 89  YKIMSRALRHSY 100


>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 189 NSKKSPIHELRQNVPRLEILLPVNILRKVQGERH 290
           N +   I +L ++VPRLE L   N+  ++ G+RH
Sbjct: 312 NQEVEDILQLHRDVPRLEDLCITNVSLRLAGQRH 345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,065,501
Number of Sequences: 59808
Number of extensions: 471119
Number of successful extensions: 1221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)