Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30088
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   4e-13
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 49   5e-06
SB_11837| Best HMM Match : Arylesterase (HMM E-Value=1.6e-10)          30   2.6  
SB_9798| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 27/40 (67%), Positives = 31/40 (77%)
 Frame = +2

Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSLAHET 733
           LNNY+MRCREWYGWHFPELGKI+TDN  + K V  +   T
Sbjct: 87  LNNYVMRCREWYGWHFPELGKIVTDNLAYAKTVKKMGMRT 126



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 39/100 (39%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +3

Query: 525 LSRYKLKFSPDKIDTMIVQAQCXXXXXXXXXXXXS*GAVNGMVGISQSLGKSSLITLCL* 704
           LSRYKLKFSPDK+DTMIVQA                            LGK     L   
Sbjct: 57  LSRYKLKFSPDKVDTMIVQAISLLDDLDKELNNYVMRCREWYGWHFPELGKIVTDNLAYA 116

Query: 705 KW*THWHTRLCIQD-*FI*HLPEDLEEKVKEAAEISMGLK 821
           K       R    +  F   LPE++EE++K AAEISMG++
Sbjct: 117 KTVKKMGMRTKAGELDFSEILPEEVEEELKTAAEISMGVE 156


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +2

Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKV 709
           +N + MR REWY +HFPEL KI+ DN ++ KV
Sbjct: 116 INTFSMRIREWYSYHFPELVKIVNDNYMYAKV 147



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +3

Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
           LGL HS SR K+KF+  ++D MI+Q+
Sbjct: 80  LGLGHSYSRAKVKFNIHRVDNMIIQS 105


>SB_11837| Best HMM Match : Arylesterase (HMM E-Value=1.6e-10)
          Length = 263

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 83  SSMLVLFETPAGYAIFKLLDESKLSEIDNLYQ-EFNTPEGASTVVKLKNF 229
           SS L LF +   Y +   +D S      NLY  + N P  A  ++ LKNF
Sbjct: 56  SSGLALFSSGLRYTVQLTIDPSIKLRKGNLYLLDLNEPNSAPVILTLKNF 105


>SB_9798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 653 WHFPELGKIITDNTLFVKVVNSLAHETMHPRLIYLTFT 766
           W+FP    +I    L ++ +NS+  +T+  +L+Y++ T
Sbjct: 42  WNFPVTSLLINHQCLTLEQLNSIPEKTLQYQLVYVSRT 79


>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 344 INSLSVTLSWVVPLEKNLTYNVYQILMSRNCSG 442
           +NS ++TLSW VP       +VY ++    C+G
Sbjct: 279 LNSSAITLSWSVPNNTGGRTDVYYLIECFKCNG 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,781,135
Number of Sequences: 59808
Number of extensions: 462178
Number of successful extensions: 1110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)