Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30071
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               33   0.24 
SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)                   30   2.3  
SB_48278| Best HMM Match : rve (HMM E-Value=7.1e-28)                   29   5.2  
SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   28   6.9  
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   28   9.1  
SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)                 28   9.1  
SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)                 28   9.1  

>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 509 LFPSFIHTQKRNPATHLKDPDMFWDLLTLRPETIHQLLYLFGDRGIP 649
           +F  F   + ++       PD  WD +T+RP + H   +L+G RG P
Sbjct: 12  VFTIFFFKESQSAVPRTSIPDEKWDYVTVRP-SAHMFWWLYGARGEP 57


>SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)
          Length = 361

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 554 HLKDPDMFWDLLTLRPETIHQLLYLFGDRGIPDGYRHMNG 673
           H K P++F    T  P+TI  L  LF   G+P+     NG
Sbjct: 201 HSKWPEIFATSSTTAPKTIEMLAGLFASHGLPEEMVSDNG 240


>SB_48278| Best HMM Match : rve (HMM E-Value=7.1e-28)
          Length = 307

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 554 HLKDPDMFWDLLTLRPETIHQLLYLFGDRGIPDGYRHMNG 673
           H K P++     T+ P+TI  L  LF   G+P+     NG
Sbjct: 147 HSKWPEIIATSSTIAPKTIEMLAGLFASHGLPEEMVSDNG 186


>SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 494 YKRSNLFPSFIHTQKRNPATHLKDPDMFWDLLTL 595
           YK+  + P+ IHT++  P+T   +PD  ++L+ +
Sbjct: 19  YKKEPIKPTQIHTKRWRPSTDFFEPDGQYNLVVI 52


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 460  HTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLP 341
            +TPS     TA PR SR  +    S PT + LTA   +LP
Sbjct: 2119 YTPSCPDTLTATPRVSRHANRYAPSVPTHDTLTATPRVLP 2158


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 354 PIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDL 467
           P+AV+  T+  + G    ++   G  V  Y D+G W+L
Sbjct: 127 PLAVKLGTITPDGGGNSYLQCDTGLWVVAYGDEGQWNL 164


>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 527 HTQKRNPATHLKDPDMFW 580
           HT+ RNP T +++P+ +W
Sbjct: 531 HTRIRNPLTRIRNPEPYW 548


>SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)
          Length = 261

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 107 PGESFKVFL*LMSWSVAGSLEAILYVP 27
           P +SF   L +M+W V GSL  IL +P
Sbjct: 129 PSQSFSNKLVIMAWVVGGSLGIILTLP 155


>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
          Length = 465

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/31 (25%), Positives = 22/31 (70%)
 Frame = -3

Query: 623 KEVDGWSLVLRSKGPKTCLDLSDVLQGFSSE 531
           ++V G   +++ +  K C+++SD+++G ++E
Sbjct: 13  RKVGGLGFLVKERASKPCVEISDIVKGSAAE 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,794,505
Number of Sequences: 59808
Number of extensions: 547943
Number of successful extensions: 1255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)