Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30069
         (495 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   9e-09
SB_2258| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.23 
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.52 
SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)          28   3.7  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.9  
SB_40884| Best HMM Match : Homeobox (HMM E-Value=0.068)                27   6.4  
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)             27   8.5  
SB_27246| Best HMM Match : C2 (HMM E-Value=0.026)                      27   8.5  

>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +3

Query: 99  SADPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFSMCGLMMR 236
           S DPRR+++  RYKP    + P ED   DYMN+LGMV SMCGLMM+
Sbjct: 55  SQDPRRSNKIFRYKPS--ANKPLEDPIPDYMNLLGMVLSMCGLMMK 98


>SB_2258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
 Frame = +3

Query: 9   TKLTQIYSLIRRVTATNICGPIIKSGKMQLSADPRRADRE----RRYKPPPPTSAP---A 167
           T L  I  +I  V    +   I+   + +   D R+ D+     ++YKPPPP S P    
Sbjct: 208 TALYAIIGVIAAVVVIAVIILIVCFVQRKKKGDTRKGDKYQQDGKQYKPPPPASQPLTKL 267

Query: 168 EDLTTDYMNILGMVFSMCGLMMRLKWCAWQLYFVPASVLQTQEFPMTLN 314
           +D   D  N    V S C   + +   A+   F  A V Q Q F  + N
Sbjct: 268 DDYPYDNANSQTAVSSYCRTFVFVAAVAYLRIF--ARVRQPQAFTTSRN 314


>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  KMQLSADPRRADRERRYKPPPPTSAPAED 173
           K   +  P++++RE++  P PP  APA D
Sbjct: 199 KESTTPSPKKSEREKKTSPTPPRPAPARD 227


>SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)
          Length = 909

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 120 DRERRYKPPPPTSAPAEDLTTDYMNILGMVFSMCG 224
           D +    P  P S   ED +TD MNI+  V S  G
Sbjct: 615 DAKHLVLPYAPDSPTGEDFSTDTMNIIDSVLSRIG 649


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +2

Query: 167 RRPNHRLYEYFRDGIFNVWL---NDEIEMVRVAAVFCSSISFANSRVSDDTKQIVSSFML 337
           R  N RLY Y ++G F+ WL   ND+ + ++V       I+   ++ + D+   V +++L
Sbjct: 471 RAGNGRLYFYKQNGRFSTWLAKQNDDKQWLQVDFSNIIKITRVATQGTPDSDWWVKTYLL 530

Query: 338 SIS 346
             S
Sbjct: 531 EFS 533


>SB_40884| Best HMM Match : Homeobox (HMM E-Value=0.068)
          Length = 229

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 267 QNTAATRTISISSLSHTLKIPSLKYSYNLWLGLLLEQKWVEVVYSDVL 124
           Q+ ++TR +++SS   T       Y  N   G+   QKW +VV  DV+
Sbjct: 87  QDESSTRHLAVSS---TTPAHFTTYQLNKLEGIFSRQKWPDVVTLDVI 131


>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
          Length = 576

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 111 RRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFSMCGLMMRL---KWCAWQLYFVP 272
           RRA   +  K P  T AP+++ T D + I  +   + GL + +   K C ++ +++P
Sbjct: 286 RRARHSQYSKRPLTTRAPSDEDTMDLVIISAVFGLLAGLALVVFLWKLCWYRTWYIP 342


>SB_27246| Best HMM Match : C2 (HMM E-Value=0.026)
          Length = 576

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 60  ICGPIIKSGKMQLSADPRRADRERRYKPPPPTSAPAEDL 176
           + GP I SG +Q   +  R   ER   P PP S  A++L
Sbjct: 426 VSGPGIISGPVQGDEERDRVSDERVAIPRPPVSFAADEL 464


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,460,277
Number of Sequences: 59808
Number of extensions: 289662
Number of successful extensions: 907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)