Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30063
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)             136   7e-33
SB_3083| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)                 30   0.85 
SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_16795| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)                   28   3.4  
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)               28   4.5  
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.5  
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)                   28   4.5  
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)                 28   4.5  
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  
SB_41829| Best HMM Match : DUF1649 (HMM E-Value=0)                     27   6.0  
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  27   6.0  
SB_10224| Best HMM Match : DUF1649 (HMM E-Value=0)                     27   6.0  
SB_40877| Best HMM Match : RVT_1 (HMM E-Value=2.9e-28)                 27   7.9  
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               27   7.9  

>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
          Length = 168

 Score =  136 bits (330), Expect = 7e-33
 Identities = 60/81 (74%), Positives = 70/81 (86%)
 Frame = +3

Query: 12  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
           MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK 
Sbjct: 1   MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60

Query: 192 KIHKRSKIKPFVKVVNYNHLM 254
           +  KRSK+KPFVKV NYNHLM
Sbjct: 61  RTAKRSKVKPFVKVFNYNHLM 81



 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +2

Query: 158 PPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKFSA-KDL-KDPAKRKK 331
           P +  +  GK+   +  + K F +      L  TRY+VD   +K    KD+ +DPA +KK
Sbjct: 50  PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109

Query: 332 LRFNTRVRFEERYKSGKNKWFFQKL 406
                +   EERYKSGKNKWFFQKL
Sbjct: 110 ALREVKSTLEERYKSGKNKWFFQKL 134


>SB_3083| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
          Length = 295

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -1

Query: 366 LSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*RVASSDYSLQPSRKALSWTSCGFYS 187
           L S+     K+++   A S  + A + + L+S    ++S+  S++   K      CG   
Sbjct: 91  LLSEENLTFKKAY-DIASSMETTAQHMADLQSAPSTLSSTSASVKSENKECY--RCGKNH 147

Query: 186 FPSSCALSGGTCRYQRRK-HARTAC 115
            PS C     TC Y ++K H    C
Sbjct: 148 HPSKCRFKEATCHYCKKKGHIVAKC 172


>SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 234 QPSRKALSWTSCGFYSFPSSCALSGGTCRY-QRRKHARTAC 115
           QP + A S    GFYS+ + C      C Y ++  H ++ C
Sbjct: 97  QPVKPARSNNCGGFYSYTTECPAKEKICNYCKKPNHFKSVC 137


>SB_16795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 285 SKLKSTV*RVASSDYSLQPSRKALSWTSCGFYSFPSSCALSGGTCRYQRRK-HARTAC 115
           S   ++V +V+SS  S   S     +  CG    PS C     TC Y ++K H    C
Sbjct: 185 SSTSASVKKVSSSPLSRSKSENKECYR-CGKNHHPSKCRFKEATCHYCKKKGHIVAKC 241


>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 249 SDYSLQPSRKALSWTSCG 196
           S Y ++P  K+L W SCG
Sbjct: 2   SSYRIKPKNKSLGWVSCG 19


>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 296 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 412
           +KDL  + P   +K  FN  +  E R++ G  K F+++LRF
Sbjct: 2   SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42


>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
          Length = 870

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = +2

Query: 251 DATRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKL 406
           D T Y +   F+      L D  K   LR NT       Y S  NKWF+QKL
Sbjct: 804 DRTNYLIIILFDDVDPSTLDDETKLY-LRTNT-------YLSVSNKWFWQKL 847


>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
          Length = 245

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 357 KRTRVLKRSFLRFAGSFRSFALNFSKL 277
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125


>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 357 KRTRVLKRSFLRFAGSFRSFALNFSKL 277
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623


>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
          Length = 366

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 357 KRTRVLKRSFLRFAGSFRSFALNFSKL 277
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVKNFSKV 86


>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 99  DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYN 245
           D+   D  Y   + AG+ +  +  HK+ G  K   +   KP +K VN N
Sbjct: 198 DDDIDDDEYHPGYSAGLKKRLKAAHKQRGYTKAFAKRGTKP-MKEVNSN 245


>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
          Length = 383

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 284 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 409
           ++ S  D +D +KRK++RF     FE   + YK+      FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281


>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 357 KRTRVLKRSFLRFAGSFRSFALNFSKL 277
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVENFSKV 86


>SB_41829| Best HMM Match : DUF1649 (HMM E-Value=0)
          Length = 218

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 245 SLDATRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGK-NKWFFQK 403
           S+D     +DF++ +  + DL    KR+ L F   +R  +  +SG+ +  F+QK
Sbjct: 52  SVDVDCDFIDFTYVRCDSDDLDSSLKRQVLGFKDALRGNKGSRSGQISLEFYQK 105


>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 154 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIIL 17
           +S+ A+ + PY    +P+S FL ++   P   Y+PL      P  + L
Sbjct: 13  VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFL 60


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 357 KRTRVLKRSFLRFAGSFRSFALNFSKL 277
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702


>SB_10224| Best HMM Match : DUF1649 (HMM E-Value=0)
          Length = 218

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 245 SLDATRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGK-NKWFFQK 403
           S+D     +DF++ +  + DL    KR+ L F   +R  +  +SG+ +  F+QK
Sbjct: 52  SVDVDCDFIDFTYVRCDSDDLDSSLKRQVLGFKDALRGNKGSRSGQISLEFYQK 105


>SB_40877| Best HMM Match : RVT_1 (HMM E-Value=2.9e-28)
          Length = 734

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -1

Query: 285 SKLKSTV*RVASSDYSLQPSRKALSWTSCGFYSFPSSCALSGGTCRYQRRK-HARTAC 115
           S   ++V +V+SS      S     +  CG    PS C     TC Y ++K H    C
Sbjct: 185 SSTSASVKKVSSSPLPCSKSENKECYR-CGKNHHPSKCRFKEATCHYCKKKGHIVAKC 241


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 293 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 409
           SAK+L++  +RK+  +NT    E RY+  K K   Q  R
Sbjct: 562 SAKELEEELERKREDYNTAAD-ERRYQMAKKKDTLQATR 599


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,816
Number of Sequences: 59808
Number of extensions: 270089
Number of successful extensions: 852
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)