Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30061
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12389| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)            31   1.0  
SB_33043| Best HMM Match : Ank (HMM E-Value=2.3e-07)                   31   1.4  
SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)       30   2.4  
SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)       29   3.2  
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)                29   5.6  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   5.6  
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_24450| Best HMM Match : zf-C3HC4 (HMM E-Value=4.9)                  28   7.4  
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06)                 28   7.4  
SB_28149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)                  28   9.8  
SB_41474| Best HMM Match : Ubie_methyltran (HMM E-Value=0.54)          28   9.8  

>SB_12389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 441 RIMKCLKPDGVLLACTFGGDTL 506
           +++ CLKPDG  +   F GDTL
Sbjct: 18  KVLSCLKPDGAFVGAMFSGDTL 39


>SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)
          Length = 441

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 417 SPSGR*AMKPTDQRCRLVIQNFPHPLSSFHIERPHQLLPYRDEFWMCHT-VSPSPPVRQE 241
           SP  R    PTD+   L + N+P PL       P +++P  DE  + HT +SP+  + ++
Sbjct: 317 SPLPRTPSPPTDEDEELDMANYPPPL-------PLEVIPLEDELLLPHTSLSPNGGIDKK 369

Query: 240 MP*Y 229
            P Y
Sbjct: 370 PPAY 373


>SB_33043| Best HMM Match : Ank (HMM E-Value=2.3e-07)
          Length = 263

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/68 (29%), Positives = 27/68 (39%)
 Frame = +3

Query: 393 SSLTFHWVNDLPGLFDRIMKCLKPDGVLLACTFGGDTLMSCVRRSNCLTWSGEEGFLLIY 572
           SS    W++    L     KC +   + L C   GD      R    +  S  +GFLL Y
Sbjct: 34  SSCILRWISTASFLRTEHRKCSEDYSLRLPCASAGDFRPKTKREICKIKPSSPQGFLLRY 93

Query: 573 HRLPDPRT 596
           H L   +T
Sbjct: 94  HILQGIKT 101


>SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)
          Length = 307

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 276 DTSRTHLDKAIVGEGVQYEKMIMDEENF-ELPDDSVDLLVSSLTFHWVNDLPGLFDRIMK 452
           D  R  L K+     VQ+  +    E+F  L ++  DL+ S+   HW+      F  I  
Sbjct: 132 DKYRVELAKSNHCSNVQF--LQGSAESFPHLGEEYYDLVFSNFVLHWIPQRTKAFRDIYD 189

Query: 453 CLKPDGVLL 479
            LKP G+L+
Sbjct: 190 SLKPGGMLV 198


>SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)
          Length = 399

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 351 ENF-ELPDDSVDLLVSSLTFHWVNDLPGLFDRIMKCLKPDGVLL 479
           E+F  L ++  DL+ S+   HW+      F  I   LKP G+L+
Sbjct: 205 ESFPHLGEEYYDLVFSNFVLHWIPQRTKAFRDIYDSLKPGGMLV 248


>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
          Length = 225

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 425 KVVHPVEGKR*NQQINAVVW*FKIFLIHYHLFILNALTNYCLIEMSSGC 279
           ++ H +  K  N  I+  VW FKI      L+ +  ++N   + +S+ C
Sbjct: 38  QIQHKIGDKETNTTISKYVWYFKIACSQIELYHIQLISNLFSVNLSTIC 86


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = -1

Query: 604 TPNVRGSGKR*YMRRNPSSPLQVRQLERLTQLIRVSPPKVQASNTPSGLRHFIILSKSPG 425
           +P VR +      R N +SPL  RQ  R++    V P   Q  + P G       +KSP 
Sbjct: 490 SPAVREAEMGRSRRDNSTSPLP-RQTRRVSPTQAVRPSSTQGQSAPVGR------TKSPS 542

Query: 424 RSFT 413
           RS+T
Sbjct: 543 RSYT 546


>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 598 NVRGSGKR*YMRRNPSSPLQVRQLERLTQ 512
           NV   G   Y+  NPS P Q+R++E LT+
Sbjct: 6   NVFRVGDYVYVETNPSLPYQIRRIEELTK 34


>SB_24450| Best HMM Match : zf-C3HC4 (HMM E-Value=4.9)
          Length = 253

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 465 DGVLLACTFGGDTLMSCVRRSNCLT 539
           D  +     GG T+ SCVR S+CLT
Sbjct: 112 DSEIKTLVIGGCTITSCVRVSSCLT 136


>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 456 LKPDGVLLACTFGGDTLMSCVRRSNCLTWSGEEGFLLIYH 575
           L  DGV +   FG   ++  +    CLTW    G L  Y+
Sbjct: 176 LTVDGVAIQKPFGSPWMLDGIWNHLCLTWDSVSGILKQYY 215


>SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06)
          Length = 239

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
 Frame = +3

Query: 471 VLLACTFGGDTLMSCVRRSNCLTWSGEEGFLLIYHRLPD-----PRTLG 602
           VL AC F  D    CV  S CL  S     +    RL D     PRT+G
Sbjct: 2   VLSACVFLTDGFQECVFDSRCLCTSNGRSVICSSGRLDDIPANIPRTVG 50


>SB_28149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 372 RLVIQNFPHPLSSFHIERPHQLLPYRDEFWMCHTVSPSPP 253
           R++I +  HPL+   + RP  L  Y D     +T +P PP
Sbjct: 164 RIIITSTSHPLTHMPLYRPQPLNKYSDG-TSVNTFAPIPP 202


>SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)
          Length = 460

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 571 YMRRNPSSPLQVRQLERLTQ 512
           Y+  NPS P Q+R++E LT+
Sbjct: 4   YVETNPSLPYQIRRIEELTK 23


>SB_41474| Best HMM Match : Ubie_methyltran (HMM E-Value=0.54)
          Length = 271

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 351 ENFELPDDSVDLLVSSLTFHWVNDLPGLFDRIMKCLKPDG 470
           E  +L D+SVD+++S+  FH+  +   L + I + L P G
Sbjct: 107 EKIDLADESVDVVISAQAFHYFANNQALAE-IHRVLVPRG 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,727,922
Number of Sequences: 59808
Number of extensions: 607020
Number of successful extensions: 1533
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)