Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30060
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              159   2e-39
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)                      28   4.9  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               27   8.6  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   8.6  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  159 bits (385), Expect = 2e-39
 Identities = 83/161 (51%), Positives = 102/161 (63%)
 Frame = +1

Query: 1   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
           IDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S
Sbjct: 110 IDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLS 169

Query: 181 VSRLARHMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILT 360
           ++RL R MK +      C   G   +D R++++P + + AL  +E ARARIL AGGEILT
Sbjct: 170 LARLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILT 229

Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHT 483
           FDQLALRAP G+ TVL+QG R AREA RH G APG P S T
Sbjct: 230 FDQLALRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDT 270


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 387 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 277
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
 Frame = -3

Query: 528 DWALLFQSLG-ANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKN 352
           DWAL F+ +G  N+  SV       RA   H    +   + ++  L   S  + LI   N
Sbjct: 163 DWAL-FEVIGKGNLAHSVNPVIP-ERAFQVH--EKVLPAVIRWGELGELSKDNYLIIKPN 218

Query: 351 FSSSSQNACTSFFGNMKSSHRHLRYLVQSHVILTVPTTTAIKPS--RVGLLHVARQTRHR 178
             + S      F     S H    Y   S + L +P    +  S  R G+LHV    + +
Sbjct: 219 HIAES---IQPFVSTKLSFHFAFPYRFVSRLSLPLPPDPQVGTSLTREGMLHVRDPEKRK 275

Query: 177 DWWPVDTAHK 148
           DW P++   K
Sbjct: 276 DWKPLNVILK 285


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -3

Query: 471 RCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKS-- 298
           RC     + T+  T  +    +  +L+S S+ S    S + SSSS +  +S++ +     
Sbjct: 212 RCQALEHRKTYTTTKTTTANNKIIILSSSSSSSSS-SSSSLSSSSSSPLSSYYHHHHHRR 270

Query: 297 ---SHRHLRYLVQSHVILTVPTTTAI 229
              +H H  Y +  H I  +  TT I
Sbjct: 271 HHLNHYHHHYHLDDHFIFIIIITTLI 296


>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 380 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRD*KSK 520
           V+R   R+ W K  +++V  CV LA++     L +  +F  R  +S+
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSR 80


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 346 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 477
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 380 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRD*KSK 520
           V+R   R+ W K  +++V  CV LA++     L +  +F  R  +S+
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSR 80


>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
          Length = 1248

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 430  REAVRHFGPAPGAPRSHTKPYVRTKGLKKQGPVVV 534
            ++AV+   PAP APR    P V+  G K+  PV++
Sbjct: 978  KDAVKPSRPAPPAPRRPPPPAVKQDGEKEVLPVLL 1012


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 290 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 409
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 430  REAVRHFGPAPGAPRSHTKPYVRTKGLKKQ 519
            ++AV+   PAP APR    P V+  G K+Q
Sbjct: 1202 KDAVKPSRPAPPAPRRPPPPAVKQDGEKEQ 1231


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 334 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 453
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 465  SWSRAKVTHCLTSISLTLYQY 403
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,974,308
Number of Sequences: 59808
Number of extensions: 416338
Number of successful extensions: 1127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)