Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30058
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36900| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)                    30   2.1  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        29   4.8  
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_26005| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_36900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 388 REVFSASATRKKDRLQLKSTCRRWRLTAVMWTTSFPTRTTNQRPLRRCNEQAT 546
           +EV        +  L LKS C +W+LT V  T +     + +R  RR +E+ T
Sbjct: 24  KEVSCQMQDLMESNLNLKSACDKWQLTIVKTTANPAFSLSTKRRTRRKSEKQT 76


>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
          Length = 815

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 384 RTRGLFRICYPKERPPTVEIYLSPVETHCSN 476
           RT  +  +C   + PP +E+YLSP++    N
Sbjct: 57  RTTTVILMCCRGDEPPNIELYLSPLQNEVRN 87


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 589 DVVHCFLDGRRRLLEAQSRQHHRHRYT 669
           D++HC LDG    L+  +  HH HR++
Sbjct: 148 DLLHCNLDGHEEFLDFVTNTHH-HRFS 173


>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = -2

Query: 844 PQTTRRGCTTSRTISMSCLLVRWAIVDKLLSYNLLF--FIKLNPVPQCHSARRQQTC--- 680
           P    +G +    IS   +L+  A+V  ++ + LL    + +   P+C  A+++ TC   
Sbjct: 214 PAVAIKGSSKKPFISCQMILLAVAVVLFVIGFILLIVGIVFITKTPECQKAQKEDTCAPS 273

Query: 679 DEHQYSG 659
           DE + SG
Sbjct: 274 DEAKRSG 280


>SB_26005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 560 LTEPYVACSLHRLRGLWFVVLVGNEVVHITAVSLHRRQVDFNCR 429
           +T P +  ++ R + LW   ++   V H+TA++    + D   R
Sbjct: 815 VTMPVIHAAMERDKQLWRYSIIARPVSHVTAIAQFESEFDVKMR 858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,004,540
Number of Sequences: 59808
Number of extensions: 505107
Number of successful extensions: 1439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)