Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30057
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)                  46   2e-05
SB_59713| Best HMM Match : eIF-4B (HMM E-Value=4.5)                    29   4.0  
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)                  29   4.0  
SB_55749| Best HMM Match : SRCR (HMM E-Value=0)                        29   5.3  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_7344| Best HMM Match : FLO_LFY (HMM E-Value=2.5)                    28   7.0  

>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = +2

Query: 350 NNRRQATLTWDVQQDNIMHGFGGYFDCTLYGNEMISIVPGTHS 478
           +N R  +L + V+   ++HGFGGYFD TLYGN  I++V G  S
Sbjct: 346 DNSRFISLEFSVKASAMLHGFGGYFDATLYGNTKINVVQGAFS 388


>SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)
          Length = 494

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +3

Query: 3   IIVSELLGSWGDNELSPECLDGASNL-LKP-GGISIPSSYRSYVAPITS 143
           II SELLG +GD+E  PE      NL L P  GI IP S+ +YV PITS
Sbjct: 164 IITSELLGCFGDDEFLPELTASLYNLFLHPTKGIPIPQSWSTYVVPITS 212


>SB_59713| Best HMM Match : eIF-4B (HMM E-Value=4.5)
          Length = 794

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 94  PPGFKRFDAPSKHSGESSLSPQEPN 20
           PPG  + DA  K + E+SLS Q PN
Sbjct: 55  PPGSPQLDAQRKANSETSLSLQPPN 79


>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
          Length = 595

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 487 DLLVSSLFPIKTPMRVQKGD-KITATFWRCVDSRRVWYEW 603
           D+   S+FPI+TP+R Q G+  +  +    V   R  Y W
Sbjct: 69  DMATVSMFPIETPVRAQLGEVSVGQSHVAVVTLERAAYTW 108


>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1224

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -2

Query: 638  CSGVDRLPTSTTHSYHTRRESTHLQNVAVILSPFCTR--IGVLIGKRLETRRSFLGYV 471
            C+G +R   +  HS  +     H Q + VI +P  T   +   I K    R  F G V
Sbjct: 844  CTGTERSLITCRHSDLSNTTCAHAQEIGVICTPNITSAFVSSFISKERSYRTGFAGVV 901


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 302 DEEGCDKSDYRGLPLTNNRRQATLTWDVQQDNIMHGFGG 418
           D   C K    G+P+ N R   TL  D+      HGF G
Sbjct: 367 DGPDCGKLVCPGVPMCNARGNCTLINDIPACTCRHGFSG 405


>SB_7344| Best HMM Match : FLO_LFY (HMM E-Value=2.5)
          Length = 358

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 168 IATSGIPQQKDKNLETLWVVYMQNKHDIAKQS 263
           +  +G P+Q+DKN+E  + +++   +D+ K S
Sbjct: 84  VLLAGFPKQRDKNIELKFYLHLPAGNDLRKTS 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,658,572
Number of Sequences: 59808
Number of extensions: 609675
Number of successful extensions: 1505
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)