Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30053
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                        31   1.0  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)                    30   2.3  
SB_12826| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 513 PLTIRWAVCSFAYKGNKKKHLSEYNRNEPND 605
           P+ + WAV    Y  N++KH  +YN N   D
Sbjct: 319 PVAVDWAVPKSMYTENQEKHKKDYNSNTLQD 349


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 403  GDGAFDCGDYELHL--ESGGGRQRLGSAPGIAGVHGRRDHSPSGG 531
            G GAF   DY  H    SGGG    G   G  G +G    +P GG
Sbjct: 1251 GGGAFSSRDYRQHRGGSSGGGMHGGGGGYGNYGGYGGYGGNPQGG 1295


>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
          Length = 912

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 433 ELHLESGGGRQRLGSAPGIAGVHGRRDHSPSGGPYARLPTRAI 561
           EL L  GGGR R   +PG+    G + H+      A  P + +
Sbjct: 69  ELELHRGGGRSRTSGSPGLQEFDGGQTHTIQVAESALAPIQEV 111


>SB_12826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 433 ELHLESGGGRQRLGSAPGIAGVHGRRDHSP 522
           EL L  GGGR R   +PG+      +D  P
Sbjct: 2   ELELHRGGGRSRTSGSPGLQEFDPTKDEKP 31


>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 386  TCVPKVGMGHSIVVTMNST*NRVVVGSGLALPLALLESMGDVTTHHQVGR 535
            TCV  VG GHS+ +   S    + +G   A  + +L   G +T  H V R
Sbjct: 882  TCVVTVGQGHSVAMATGSVSVALPIGIAGACAVLVLVVFG-LTCRHVVKR 930


>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 433  ELHLESGGGRQRLGSAPGIAGVHGRR 510
            EL L  GGGR R   +PG+    G R
Sbjct: 2498 ELELHRGGGRSRTSGSPGLQEFDGGR 2523


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,874,766
Number of Sequences: 59808
Number of extensions: 465549
Number of successful extensions: 1250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)