Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30051
(291 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 32 0.092
SB_18647| Best HMM Match : SH2 (HMM E-Value=7.3e-16) 30 0.28
SB_36001| Best HMM Match : CheD (HMM E-Value=3.9) 29 0.65
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 28 1.1
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 27 2.0
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.0
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6) 27 2.6
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26) 26 4.6
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21) 26 4.6
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.6
SB_24510| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0) 25 8.0
SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1) 25 8.0
SB_19129| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 31.9 bits (69), Expect = 0.092
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +2
Query: 11 AADVIITL-TRDTDAVPADNTIDEF---ENLYKDVSTSRAAEFETLVSQNASRETGNHNT 178
++D I++ +++ +P+++T +E+ N + V+ +A TL++ S E G H T
Sbjct: 447 SSDTILSPPSKEATNLPSEDTYEEYLAMVNEMESVNIKQAMVHGTLLTLQTSDEIG-HTT 505
Query: 179 SGAAADDAETDLKSNLSEFERVKYN 253
SG A E + SE +YN
Sbjct: 506 SGTAFTSKEAQAMVSPSEVNTEQYN 530
>SB_18647| Best HMM Match : SH2 (HMM E-Value=7.3e-16)
Length = 720
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 32 LTRDTDAVPADN-TIDEFENLYKDVSTSRAAEFETLVSQ 145
L +D D+V A T+DE +NL VS E +T+VS+
Sbjct: 136 LLKDLDSVEAGGKTLDELQNLISGVSHDLVRELKTMVSR 174
>SB_36001| Best HMM Match : CheD (HMM E-Value=3.9)
Length = 313
Score = 29.1 bits (62), Expect = 0.65
Identities = 19/79 (24%), Positives = 39/79 (49%)
Frame = +2
Query: 2 DKPAADVIITLTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTS 181
D+ + DV + DA+ +N I++ +NLY + +E +T S++ +R+ + S
Sbjct: 228 DEMSNDVEDEEDEEDDAIEKENAIEDEDNLYAIILKEYFSETDT-ESEDENRQPRTDSLS 286
Query: 182 GAAADDAETDLKSNLSEFE 238
+D + + +S E E
Sbjct: 287 VNDINDRQVETRSENEERE 305
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +2
Query: 41 DTDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKS 220
D + A TIDE E L KD+ T +N E + A AD D+ S
Sbjct: 439 DEEITKAILTIDEEEELSKDMVEQLLKYVPTAAEKNLLNENNKEKDNFARADKFLYDM-S 497
Query: 221 NLSEFE 238
+L+E E
Sbjct: 498 SLAELE 503
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 41 DTDAVPADNTID--EFENLYKDVSTSR 115
DTD V + +D EF N YK +ST R
Sbjct: 211 DTDTVNSSGLLDFEEFANFYKSISTRR 237
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 119 AEFETLVSQNASRET---GNHNTSGAAADDAETDLKSNLSEFERVK 247
AEF +V++N S T GN G + ET+ + FE+VK
Sbjct: 378 AEFTAVVTKNGSVYTFGQGNQGQLGLGSSMMETEFPERIPLFEKVK 423
>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
Length = 810
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 125 FETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFERVKYN 253
+ L+ QN+ R + N+ SG D A E E YN
Sbjct: 32 YRILILQNSKRRSNNYFCSGKTGDSATNTGMPKCDEKENQNYN 74
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 29 TLTRDTDAVPADNTIDEFENLYKD--VSTSRAAEFETLVSQNASRETGNHN 175
T+T T TI E ++ +T+ AAE T + ++ +R T N+N
Sbjct: 52 TITETTTTTEEPTTITEITTTTEEPTTTTTTAAETPTTIMRHNNRRTDNNN 102
>SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26)
Length = 316
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 59 ADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETG 166
A+N + + L+K TS +EF+ L+ + TG
Sbjct: 131 AENAVQTVKRLFKKCKTSGGSEFQALLDWRNTPTTG 166
>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
Length = 791
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 29 TLTRDTDAVPADNTIDEFENLYKDVSTSR 115
TL + DAVP NT+ + +N + ST R
Sbjct: 376 TLRKMRDAVPGSNTLRKMQNAVQGSSTLR 404
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 59 ADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETG 166
A+N + + L+K TS +EF+ L+ + TG
Sbjct: 970 AENAVQTVKRLFKKCKTSGGSEFQALLDWRNTPTTG 1005
>SB_24510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +2
Query: 98 DVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKS 220
D+S R F L S GN A D + +LKS
Sbjct: 48 DISARRTGSFNNLTSPLTLTSRGNRINIAGALPDEDVELKS 88
>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
Length = 1663
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 50 AVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRE 160
AV N ID++ N+Y ++ R A + V ++ +E
Sbjct: 1082 AVSWKNDIDQYYNIYAELGRGRYAVVKKCVEKSTGKE 1118
>SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)
Length = 360
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/69 (21%), Positives = 29/69 (42%)
Frame = +2
Query: 29 TLTRDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAET 208
T T+ T TI + + AEFE+ + A+ +T + T + + T
Sbjct: 276 TATQATTKTKEYTTIKPSTTEESTTNEASTAEFESTTAAQATTKTEAYTTKKPSTTEGST 335
Query: 209 DLKSNLSEF 235
+++ +EF
Sbjct: 336 TTEASTAEF 344
>SB_19129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 225 RFDLRXXXXXXXXAPLVLWF-PVSLLAFCETSVSNSAARDVDTSLYRFSNS 76
+FD+R PL LWF L FC N + D S++ +NS
Sbjct: 34 KFDIRQWFLVTDWNPLTLWFYEDCYLRFCS---QNFSLEDFHVSIHLANNS 81
>SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 25.4 bits (53), Expect = 8.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +2
Query: 80 FENLYKDVSTSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNL-SEFERVKYNR 256
FE K+V + E + ASR H A D DLK+ L SE K
Sbjct: 177 FERRRKEVIAQTRQQCEEEAATEASRVARLHQQEVGALDQRIDDLKNMLASERAAAKKLA 236
Query: 257 GVNQ*IKKKKK 289
GV+ +K+ K
Sbjct: 237 GVHLALKEDYK 247
>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 DEFENLYKDV-STSRAAEFETLVSQNASRETGNHNTSGAAADDAETDLKSNLSEFE 238
DE++ ++D+ SR ++ VSQ S H AAA + ETD++ ++ E
Sbjct: 54 DEYDEDFEDLREQSRRRRQKSRVSQRISSA---HEGRRAAAPEVETDMRRTKTDSE 106
>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 180 LVLWFPVSLLAFCETSVSNSAAR 112
+++ FP S++AFC S+ +A R
Sbjct: 407 IIIVFPFSVIAFCYLSIFRAARR 429
>SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 38 RDTDAVPADNTIDEFENLYKDVSTSRAAEFETLVSQNASRE 160
R+T+ P+D+ + S+ R+A ET +S ASRE
Sbjct: 119 RETEIQPSDSVSQVSRRSRRSSSSVRSAVSETRLSDLASRE 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,375,227
Number of Sequences: 59808
Number of extensions: 92580
Number of successful extensions: 384
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 328507322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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