Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30047
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0) 29 3.1
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 29 3.1
SB_29489| Best HMM Match : Glu_syn_central (HMM E-Value=1.1e-05) 29 3.1
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 28 7.2
SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0)
Length = 911
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 78 FKQLFAQLLFDYFKQLFAQLLFDYFK 103
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 90 FKQLFAQLLFDYFKQLFAQLLFDYFK 115
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 869 FKQLFAQLLFDYFKQLFAQLLFDYFK 894
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 881 FKQLFAQLLFDYFKQLFAQLLFDYFK 906
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 893 FKQLFAQLLFDYFKQLFAQLLFDYFK 918
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 905 FKQLFAQLLFDYFKQLFAQLLFDYFK 930
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 917 FKQLFAQLLFDYFKQLFAQLLFDYFK 942
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 929 FKQLFAQLLFDYFKQLFAQLLFDYFK 954
>SB_29489| Best HMM Match : Glu_syn_central (HMM E-Value=1.1e-05)
Length = 180
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 78 FKQLFAQLLFDYFKQLFAQLLFDYFK 103
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 90 FKQLFAQLLFDYFKQLFAQLLFDYFK 115
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 102 FKQLFAQLLFDYFKQLFAQLLFDYFK 127
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 114 FKQLFAQLLFDYFKQLFAQLLFDYFK 139
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 126 FKQLFAQLLFDYFKQLFAQLLFDYFK 151
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 138 FKQLFAQLLFDYFKQLFAQLLFDYFK 163
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 501 FKQLLMGLEGEYFRRLFVKNLFDEFE 424
FKQL L +YF++LF + LFD F+
Sbjct: 150 FKQLFAQLLFDYFKQLFAQLLFDYFK 175
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 510 CFSEFIFFFQYNYLHTIIHH 569
CFS F +YNY H HH
Sbjct: 69 CFSRFTITTKYNYRHNYKHH 88
>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 416 RQFSNSSNKFLTKSRRKYSPSRPINNCLNFR 508
+Q + S+KF+ KS+RK ++ I+N L +
Sbjct: 50 KQLTQESSKFMQKSKRKKLMTKDIDNALRLQ 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,522,537
Number of Sequences: 59808
Number of extensions: 287970
Number of successful extensions: 499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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