Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30046
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                143   2e-34
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           93   3e-19
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              67   2e-11
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.8  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       28   7.2  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         28   9.5  
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     28   9.5  
SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   9.5  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  143 bits (346), Expect = 2e-34
 Identities = 64/83 (77%), Positives = 74/83 (89%)
 Frame = +2

Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 691
           F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPPK    
Sbjct: 139 FSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKS 198

Query: 692 FTAQVIVLNHPGQISNGYTPVLD 760
           FTAQVIV+NHPG+I  GY+PVLD
Sbjct: 199 FTAQVIVMNHPGEIHAGYSPVLD 221



 Score =  124 bits (298), Expect = 1e-28
 Identities = 58/89 (65%), Positives = 68/89 (76%), Gaps = 6/89 (6%)
 Frame = +3

Query: 273 NMLEPSTKMPWFKAWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 434
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 435 YKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
           YKIGGIGTVPVGRVETGVLKPGT+V+  P
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSP 141


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 40/77 (51%), Positives = 57/77 (74%)
 Frame = +1

Query: 1   ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
           AD  VL+++A  GEFE G  + GQTREHA+LA T GVK L++ VNKMD     ++E R+E
Sbjct: 246 ADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYE 305

Query: 181 EIKKEVSSYIKKIGYNP 231
           EIK +++ ++KK+G+NP
Sbjct: 306 EIKVKLTPFLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +1

Query: 1   ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 144
           AD A+L+V A TGEFEAG    GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 37  ADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
 Frame = -2

Query: 326 LHLPCLEPRHFG*RLQHVVSVPSRMGTKATAAGL*PIFLMYEDTSFLISSNLGSLYGGSV 147
           +H+    P   G R+ H V+  S  G  ATA  + P  +M +     ++    + +GG  
Sbjct: 420 IHIGPYGPPPSGIRVSHAVTTASAQGAAATATVMNPAIIMDQTRYIALTQQAAAGFGGLA 479

Query: 146 ESILF--TPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAA 24
            + +    P  S +      S     + P L +P ++S +P +
Sbjct: 480 TNCMAGDVPGSSSMMDVTTPSSGIYSM-PVLGVPPASSGIPVS 521


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 209  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 57
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 56   IPASNSPVPAAT 21
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 PSCCRFRAHSGWHGDNMLEPSTKMPWFKAWQVERKE 335
           P   + + ++ +H DN    +   PWF+AW  +++E
Sbjct: 180 PRIPKKKKNTFYHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 385 HLPAPLTSPCVFPCKTYTKSVVLVPCPSAELKLVC*NQVPLCLCP 519
           +L   +TS C+    T +  V +V CPS    ++C ++V + LCP
Sbjct: 60  NLSHDVTSSCLCHVVTVSYCVCIVLCPSRVCIVLCPSRVCIVLCP 104


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 661 GVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRFDFSSDVGGGKDTMVP 497
           G T   TTT      V    T ++SRYS++E  + H + +     + GG    +P
Sbjct: 86  GQTDRRTTTHTATSVVENPYTSLISRYSYIEKLMTHHYTY---RHISGGDPLHIP 137


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 373 MPSCHLPAPLTSPCVFP-CKTYTKSVVLVPCPSAELKLVC*NQVPLCL 513
           +P+CH     ++PC    CK  T++  +  C        C    PLCL
Sbjct: 266 VPNCHTGTCQSNPCGRGLCKELTRTTYMCICKEGFTGTHCETGTPLCL 313


>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 521 ANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 676
           A+ TT          A+Q E  PG ++G   + + VKEL++   AG +   PP
Sbjct: 49  ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 16  LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 192
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 193 EVSS 204
              S
Sbjct: 425 RTVS 428


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -3

Query: 499 PGFNTPVSTLPTGTVPIPP---ILYTSCRGRRRGLSVGRAGGRMASRASMRHFPSALPSL 329
           PG  TPV TL  G+ P+ P   +L+TS    R   ++  +     +R+S+    + L + 
Sbjct: 48  PGLRTPVITLSIGSSPLKPYSHLLFTSMDNLRPRSTMFSS----TTRSSLSPTKTRLDAY 103

Query: 328 RSTCHALNQGIL 293
           RST       +L
Sbjct: 104 RSTSPVKTSSVL 115


>SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 571 ESFVVHLHRFDFSSDVGGGKDTMVPGFNTPVSTLPTGTVPIPPILYTSCR 422
           E + VH   F+F+ D+G G   M+    T V   P   V   P L  +CR
Sbjct: 24  EIWCVHEVGFNFTLDLGNGHFYMLISVITSVLPFPEEDVDTTPPLRGACR 73


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 402 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
           ++P    + D Y + G+GTV  G    G+++    + L P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,826,367
Number of Sequences: 59808
Number of extensions: 671623
Number of successful extensions: 1927
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)